LOCUS AEE85232.1 455 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002687-4820
PROTEIN_ID AEE85232.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G26650"
/gene_synonym="T15N24.100"
/gene_synonym="T15N24_100"
/inference="Similar to RNA sequence,
EST:INSD:DR356404.1,INSD:EH956896.1,INSD:Z24471.1,
INSD:BP848122.1,INSD:BP803374.1,INSD:BP605806.1,
INSD:EL179359.1,INSD:AV539286.1,INSD:DR383099.1,
INSD:EH870037.1,INSD:AV817185.1,INSD:EL298780.1,
INSD:EL147260.1,INSD:EH864208.1,INSD:AV439621.1,
INSD:DR356407.1,INSD:BP807219.1,INSD:BP790196.1,
INSD:ES084111.1,INSD:ES003460.1,INSD:BP607636.1,
INSD:EL168634.1,INSD:AV567484.1,INSD:EL340515.1,
INSD:ES189355.1,INSD:EH841084.1,INSD:ES107296.1,
INSD:BP566514.1,INSD:BP610645.1,INSD:BP853168.1,
INSD:EL087081.1,INSD:ES004120.1,INSD:AV817967.1,
INSD:BP587227.1,INSD:BP802763.1,INSD:AV539782.1,
INSD:EL157873.1,INSD:EH871372.1,INSD:BP843462.1,
INSD:EL331484.1,INSD:AV441731.1,INSD:DR356406.1,
INSD:EL318871.1,INSD:BP841765.1,INSD:EL975181.1,
INSD:EH862742.1,INSD:AV551701.1,INSD:DR382848.1,
INSD:BP799425.1,INSD:BP661951.1,INSD:T21874.1,
INSD:AV796360.1,INSD:DR356408.1,INSD:DR356409.1,
INSD:EL080066.1,INSD:DR383091.1,INSD:EH983452.1,
INSD:EH917676.1,INSD:EL278166.1,INSD:AV813467.1,
INSD:ES017736.1,INSD:BP664014.1,INSD:AI995401.1,
INSD:EL335003.1,INSD:EG446166.1,INSD:AV826827.1,
INSD:AV806283.1,INSD:BP809425.1,INSD:BP809772.1,
INSD:EL267754.1,INSD:EH916598.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF419605.1,INSD:AJ002414.1,INSD:BX827489.1,
INSD:BX827797.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
(RRM/RBD/RNP motifs) family protein (TAIR:AT5G55550.4);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="TAIR:AT4G26650"
/db_xref="Araport:AT4G26650"
intron_pos 5:0 (1/3)
intron_pos 84:0 (2/3)
intron_pos 452:1 (3/3)
BEGIN
1 MNPEEQKMES ASDLGKLFIG GISWDTDEER LQEYFGKYGD LVEAVIMRDR TTGRARGFGF
61 IVFADPSVAE RVIMDKHIID GRTVEAKKAV PRDDQQVLKR HASPMHLISP SHGGNGGGAR
121 TKKIFVGGLP SSITEAEFKN YFDQFGTIAD VVVMYDHNTQ RPRGFGFITF DSEESVDMVL
181 HKTFHELNGK MVEVKRAVPK ELSSTTPNRS PLIGYGNNYG VVPNRSSANS YFNSFPPGYN
241 NNNLGSAGRF SPIGSGRNAF SSFGLGLNQE LNLNSNFDGN TLGYSRIPGN QYFNSASPNR
301 YNSPIGYNRG DSAYNPSNRD LWGNRSDSSG PGWNLGVSVG NNRGNWGLSS VVSDNNGYGR
361 SYGAGSGLSG LSFAGNTNGF DGSIGELYRG SSVYSDSTWQ QSMPHHQSSN ELDGLSRSYG
421 FGIDNVGSDP SANASEGYSG NYNVGNRQTH RGIEA
//