LOCUS AEE85142.1 495 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding KH domain-containing
protein protein.
ACCESSION CP002687-4678
PROTEIN_ID AEE85142.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PEP"
/locus_tag="AT4G26000"
/gene_synonym="F20B18.110"
/gene_synonym="F20B18_110"
/gene_synonym="PEPPER"
/inference="Similar to RNA sequence,
EST:INSD:AV809556.1,INSD:DR252406.1,INSD:BP800073.1,
INSD:EL277060.1,INSD:BP644718.1,INSD:EL059812.1,
INSD:DR252407.1,INSD:BP588403.1,INSD:AV794623.1,
INSD:AV830178.1,INSD:AV806566.1,INSD:BP861197.1,
INSD:BP825697.1,INSD:DR375160.1,INSD:BP576400.1,
INSD:EH962951.1,INSD:DR252408.1,INSD:EH812321.1,
INSD:BP652762.1,INSD:EL244023.1,INSD:BP665912.1,
INSD:ES045596.1,INSD:AV556409.1,INSD:BP651828.1,
INSD:AV826376.1,INSD:BP788993.1,INSD:EL052645.1,
INSD:BP843470.1,INSD:AV810515.1,INSD:DR252404.1,
INSD:BX838032.1,INSD:DR252405.1,INSD:EL153936.1,
INSD:BP805787.1,INSD:EH949406.1,INSD:BP836941.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX827946.1,INSD:AY089102.1,INSD:AY056288.1,
INSD:AY114064.1,INSD:AY099659.1,INSD:BX827197.1"
/note="PEPPER (PEP); FUNCTIONS IN: RNA binding, nucleic
acid binding; INVOLVED IN: shoot development, gynoecium
development; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: K Homology,
type 1, subgroup (InterPro:IPR018111), K Homology
(InterPro:IPR004087), K Homology, type 1
(InterPro:IPR004088); BEST Arabidopsis thaliana protein
match is: RNA-binding KH domain-containing protein
(TAIR:AT3G04610.1); Has 2804 Blast hits to 2065 proteins
in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1818;
Fungi - 225; Plants - 670; Viruses - 0; Other Eukaryotes -
91 (source: NCBI BLink)."
/db_xref="TAIR:AT4G26000"
/db_xref="Araport:AT4G26000"
intron_pos 121:0 (1/5)
intron_pos 205:1 (2/5)
intron_pos 255:0 (3/5)
intron_pos 341:0 (4/5)
intron_pos 405:0 (5/5)
BEGIN
1 MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN
61 DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC EETRARIKVL DGPVNTPDRI
121 VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL
181 IGKQGSLIKS IVENSGASVR ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR
241 FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301 DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG
361 ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE QLIQEFIINH KEPVSVSGGY
421 ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE
481 YRPASDVGGY SSYNL
//