LOCUS AEE85128.1 855 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana pumilio 6 protein.
ACCESSION CP002687-4660
PROTEIN_ID AEE85128.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PUM6"
/locus_tag="AT4G25880"
/gene_synonym="APUM6"
/gene_synonym="F14M19.160"
/gene_synonym="F14M19_160"
/gene_synonym="pumilio 6"
/inference="Similar to RNA sequence,
EST:INSD:ES206257.1,INSD:AV528109.1,INSD:AV782452.1,
INSD:BP804752.1,INSD:BP571441.1,INSD:AV523596.1,
INSD:AV816996.1,INSD:BP564825.1,INSD:BP599676.1,
INSD:EL069224.1,INSD:AV799006.1,INSD:EL186693.1,
INSD:AV528227.1,INSD:EL016582.1,INSD:BP572506.1,
INSD:ES163760.1,INSD:AV529303.1,INSD:BP564649.1,
INSD:ES172859.1,INSD:AV831819.1,INSD:BU636414.1,
INSD:BP600187.1,INSD:BP582859.1,INSD:EL187348.1,
INSD:BP609824.1,INSD:BP613927.1,INSD:EL175702.1,
INSD:BP614231.1,INSD:EG423889.1,INSD:EG423887.1,
INSD:EH979550.1,INSD:AA597645.1,INSD:EH845877.1,
INSD:BP805538.1,INSD:EL152796.1,INSD:BP613614.1,
INSD:EG485812.1,INSD:BP568268.1,INSD:BP583546.1,
INSD:EH846275.1,INSD:BP816287.1,INSD:EH918619.1,
INSD:EL238207.1,INSD:AV799012.1,INSD:EH950198.1,
INSD:BP564101.1,INSD:BP791105.1,INSD:BP578892.1,
INSD:BP579125.1,INSD:EH929479.1,INSD:EL998906.1,
INSD:EL220986.1,INSD:EG438728.1,INSD:BP583263.1,
INSD:EH867887.1,INSD:AV522786.1,INSD:BP579448.1,
INSD:EG438727.1,INSD:ES142371.1,INSD:BP640401.1,
INSD:AV793582.1,INSD:BP619136.1,INSD:EL068795.1,
INSD:BP611998.1,INSD:BP787995.1,INSD:EH876656.1,
INSD:AV827690.1,INSD:EL029385.1,INSD:EL012623.1,
INSD:EL136215.1,INSD:ES142384.1,INSD:EL127392.1,
INSD:ES038286.1,INSD:AV528308.1"
/note="pumilio 6 (PUM6); FUNCTIONS IN: RNA binding,
binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Pumilio RNA-binding repeat
(InterPro:IPR001313), Armadillo-like helical
(InterPro:IPR011989), Armadillo-type fold
(InterPro:IPR016024); BEST Arabidopsis thaliana protein
match is: pumilio 5 (TAIR:AT3G20250.1); Has 3872 Blast
hits to 2064 proteins in 251 species: Archae - 0; Bacteria
- 18; Metazoa - 936; Fungi - 1249; Plants - 864; Viruses -
0; Other Eukaryotes - 805 (source: NCBI BLink)."
/db_xref="TAIR:AT4G25880"
/db_xref="Araport:AT4G25880"
intron_pos 166:0 (1/8)
intron_pos 541:2 (2/8)
intron_pos 583:0 (3/8)
intron_pos 619:0 (4/8)
intron_pos 690:0 (5/8)
intron_pos 727:0 (6/8)
intron_pos 792:0 (7/8)
intron_pos 849:1 (8/8)
BEGIN
1 MATENPIRIS GSNERWSNSR KVSVPNRSGS APPNMEGSFL AVDNLLSRQG GSVYNNLMLP
61 RYGFEEPVTT HPSSKHSLNR IPSPPIYYPT EYQFIDNRVG RFRSNQGLNK VNSPIHLSQG
121 KLSTHKEVSE DESSQQLSVN SVSDRTDGLD IRLSPGSQSL ADFRQDDTSS GQTPQHSRSN
181 SSNGEVNTAD ESGNFSELSD DVVVKDNAAS TARASIGNEK SPDESTIISK MKSTNISGPG
241 TAKYPREPRY GQPERQPHQQ QNNATWIQGG SNMGSHGVND AVIGAGQFHY GQPYKFSGDG
301 QPVLQSSGFT PPLLYTATQT AYMTSPAHVY NMQSPAVYSP QYGYGPYTNM IPQFMPGYPS
361 HGSVPVVVSP DFIPQLSGPS AGSVVHGGEM QYAEKLYVPP GQPSFPDPMY MQYCQQSFGQ
421 MEPLAPRNHT NAPESQKDDP KFLRQIRGPS NSNMARPGMG VNYYGIQPNM GIMVQYLPTH
481 LGPPLSPGHV PYVEAYPGWQ PQGSLEGANG PRLCNFLEEL KSGKGRRFDL SDITGHIVEF
541 SRFIQQKLEN CKPEEKAAVF REILPHACKL MTDVFGNYVI QKFFEYGNST QRKELADQLM
601 GQIVPLSLQM YGCRVIQKAL DVIEPDQRVR LARELDGQVM RCVRDQNGNH VIQKCIENIP
661 ADKVGFMLYA FRGQVSSLSM HPYGCRVIQR LLERCSHDHQ CRFITEEILE SVCVLSKDQY
721 GNYVTQHVLE KGTSEERERI GRKLSGHIVQ LSLHKFASNV IEKCLEYGGR VERDLIIKEI
781 AGPDESYNSL LMMMKDQYGN YVVQKIFETC TADQRLTLFS RVRMHASALK KYTYGKHIVS
841 RLEQPSIEEN QELRR
//