LOCUS AEE85076.1 200 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Cleavage/polyadenylation specificity
factor, 25kDa subunit protein.
ACCESSION CP002687-4594
PROTEIN_ID AEE85076.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G25550"
/gene_synonym="M7J2.80"
/gene_synonym="M7J2_80"
/inference="Similar to RNA sequence,
EST:INSD:DR285108.1,INSD:DR285106.1,INSD:ES042785.1,
INSD:AU230175.1,INSD:BP865693.1,INSD:AU236554.1,
INSD:DR378290.1,INSD:ES140086.1,INSD:ES171327.1,
INSD:BP857292.1,INSD:BP624072.1,INSD:ES095648.1,
INSD:ES110591.1,INSD:ES018480.1,INSD:DR285109.1,
INSD:AV537408.1,INSD:EH887655.1,INSD:BP620607.1,
INSD:EL218921.1,INSD:EL281985.1,INSD:AV554529.1,
INSD:BP588371.1,INSD:EL315755.1,INSD:EL213178.1,
INSD:AV521345.1,INSD:AU227505.1,INSD:BP587153.1,
INSD:BP587988.1,INSD:ES033143.1,INSD:EL127922.1,
INSD:EL220813.1,INSD:DR285107.1,INSD:BP563032.2,
INSD:BX835051.1,INSD:EL093056.1,INSD:BP858876.1,
INSD:ES058043.1,INSD:BP865694.1,INSD:BP671131.1,
INSD:BP589805.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK228476.1,INSD:AK118070.1,INSD:BX828932.1,
INSD:BT005519.1"
/note="Cleavage/polyadenylation specificity factor, 25kDa
subunit; CONTAINS InterPro DOMAIN/s:
Cleavage/polyadenylation specificity factor, 25kDa subunit
(InterPro:IPR016706); BEST Arabidopsis thaliana protein
match is: homolog of CFIM-25 (TAIR:AT4G29820.1); Has 397
Blast hits to 397 proteins in 170 species: Archae - 0;
Bacteria - 0; Metazoa - 171; Fungi - 88; Plants - 70;
Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink)."
/db_xref="TAIR:AT4G25550"
/db_xref="Araport:AT4G25550"
intron_pos 40:2 (1/6)
intron_pos 56:0 (2/6)
intron_pos 87:1 (3/6)
intron_pos 112:0 (4/6)
intron_pos 141:0 (5/6)
intron_pos 178:0 (6/6)
BEGIN
1 MAMSQVVNTY PLSNYSFGTK EPKLEKDTSV ADRLARMKIN YMKEGMRTSV EGILLVQEHN
61 HPHILLLQIG NTFCKLPGGR LKPGENEADG LKRKLTSKLG GNSAALVPDW TVGECVATWW
121 RPNFETMMYP YCPPHITKPK ECKRLYIVHL SEKEYFAVPK NLKLLAVPLF ELYDNVQRYG
181 PVISTIPQQL SRFHFNMISS
//