LOCUS AEE84903.1 646 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Rhamnogalacturonate lyase family
protein protein.
ACCESSION CP002687-4349
PROTEIN_ID AEE84903.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G24430"
/gene_synonym="T22A6.260"
/gene_synonym="T22A6_260"
/inference="Similar to RNA sequence, EST:INSD:AV811397.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT021099.1,INSD:BT015775.1,INSD:AY057715.1"
/note="Rhamnogalacturonate lyase family protein; FUNCTIONS
IN: lyase activity; INVOLVED IN: biological_process
unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9
plant structures; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325),
Carbohydrate-binding-like fold (InterPro:IPR013784),
Galactose-binding domain-like (InterPro:IPR008979); BEST
Arabidopsis thaliana protein match is: Rhamnogalacturonate
lyase family protein (TAIR:AT1G09890.1); Has 287 Blast
hits to 273 proteins in 60 species: Archae - 0; Bacteria -
42; Metazoa - 0; Fungi - 83; Plants - 162; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink)."
/db_xref="TAIR:AT4G24430"
/db_xref="Araport:AT4G24430"
intron_pos 16:0 (1/12)
intron_pos 56:2 (2/12)
intron_pos 76:2 (3/12)
intron_pos 116:2 (4/12)
intron_pos 156:2 (5/12)
intron_pos 261:0 (6/12)
intron_pos 314:0 (7/12)
intron_pos 349:2 (8/12)
intron_pos 380:0 (9/12)
intron_pos 427:1 (10/12)
intron_pos 479:2 (11/12)
intron_pos 518:2 (12/12)
BEGIN
1 MSNQDSVQLD VQESHVVMGN GKVKVTISKP DGFVTGISYQ GVDNLLETHN EDFNRGYWDL
61 VWSDEGTPGT TGKSERIKGT SFEVVVENEE LVEISFSRKW DSSLQDSIAP INVDKRFIMR
121 KDVTGFYSYA IFEHLAEWPA FNLPQTRIVY KLRKDKFKYM AIADNRQRKM PLPEDRLGKR
181 GRPLAYPEAV LLVHPVEDEF KGEVDDKYEY SSENKDLKVH GWISHNLDLG CWQIIPSNEF
241 RSGGLSKQNL TSHVGPISLA MFLSAHYAGE DMVMKVKAGD SWKKVFGPVF TYLNCLPDKT
301 SDPLSLWQDA KNQMLTEVQS WPYDFPASED FPVSDKRGCI SGRLLVCDKF LSDDFLPANG
361 AFVGLAPPGE VGSWQLESKG YQFWTEADSD GYFAINDIRE GEYNLNGYVT GWIGDYQYEQ
421 LINITAGCDI DVGNIVYEPP RDGPTVWEIG IPDRSAAEFF VPDPNPKYIN KLYIGHPDRF
481 RQYGLWERYT ELYPKEDLVF TIGVSDYKKD WFFAHVTRKM GDDTYQKTTW QIKFKLENVQ
541 KSCTYKIRIA LATANVAELQ VRMNDDDTEK TTPIFTTGVI GHDNAIARHG IHGIYRLYNV
601 DVPSEKLVEG DNTLFLTQTM TTTGAFNGLM YDYIRLEGPP LDSYSH
//