LOCUS AEE84379.1 426 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Cytidine/deoxycytidylate deaminase
family protein protein.
ACCESSION CP002687-3656
PROTEIN_ID AEE84379.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PyrD"
/locus_tag="AT4G20960"
/gene_synonym="pyrimidine deaminase"
/gene_synonym="T13K14.120"
/gene_synonym="T13K14_120"
/inference="Similar to RNA sequence,
EST:INSD:EG438240.1,INSD:BP630494.1,INSD:EL317662.1,
INSD:AU239585.1,INSD:EL308267.1,INSD:EL057875.1,
INSD:EH963878.1,INSD:DR378663.1,INSD:AU230913.1,
INSD:BP867817.1,INSD:DR288125.1,INSD:BP622643.1,
INSD:DR288123.1,INSD:BU636064.1,INSD:EL169843.1,
INSD:DR288124.1,INSD:EG438229.1,INSD:BP634411.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828126.1,INSD:BX828419.1,INSD:BX828119.1,
INSD:BX827388.1,INSD:BX827473.1,INSD:BX827349.1,
INSD:AY088903.1,INSD:AK118717.1,INSD:BT006051.1"
/note="Cytidine/deoxycytidylate deaminase family protein;
FUNCTIONS IN: hydrolase activity, zinc ion binding,
diaminohydroxyphosphoribosylaminopyrimidine deaminase
activity; INVOLVED IN: riboflavin biosynthetic process;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding
(InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding
(InterPro:IPR002125), Cytidine deaminase-like
(InterPro:IPR016193), Riboflavin biosynthesis protein RibD
(InterPro:IPR004794); BEST Arabidopsis thaliana protein
match is: cytidine/deoxycytidylate deaminase family
protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G20960"
/db_xref="Araport:AT4G20960"
intron_pos 124:0 (1/2)
intron_pos 223:2 (2/2)
BEGIN
1 MQISCLPISI PSITPRTSIP LLPSLSSNPR RIFNLTSLQS PNHCFFKRLH KSQTGFSNPV
61 LAAMRREEDV EVDDSFYMRK CVELAKRAIG CTSPNPMVGC VIVKDGDIVG QGFHPKAGQP
121 HAEVFALRDA GELAENATAY VSLEPCNHYG RTPPCTEALI KAKVRRVVIG MVDPNPIVFS
181 SGISRLKDAG IDVTVSVEEE LCKKMNEGFI HRMLTGKPFL ALRYSMSVNG CLLDKIGQGA
241 SDSGGYYSKL LQEYDAIILS SSLSDELSSI SSQEAINVSI QPIQIIVASN AQQSHILASS
301 HTVEESGPKV VVFTAKESVA ESGISSSGVE TVVLEKINLD SILDYCYNRG LCSVLLDLRG
361 NVKDLEVLLR DGFEQKLLQK VIIEVLPEWS TKDERQIASM KWLESKHVKD LQSKQLGGSV
421 LLEGYF
//