LOCUS AEE84330.1 257 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana small nuclear ribonucleoprotein associated
protein B protein.
ACCESSION CP002687-3582
PROTEIN_ID AEE84330.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="smB"
/locus_tag="AT4G20440"
/gene_synonym="F9F13.90"
/gene_synonym="F9F13_90"
/gene_synonym="small nuclear ribonucleoprotein associated
protein B"
/inference="Similar to RNA sequence,
EST:INSD:EL125210.1,INSD:ES110749.1,INSD:ES195381.1,
INSD:ES159715.1,INSD:DR297981.1,INSD:DR297974.1,
INSD:BP838755.2,INSD:DR297978.1,INSD:EG528805.1,
INSD:AU236760.2,INSD:DR297962.1,INSD:EL336214.1,
INSD:ES029720.1,INSD:ES142441.1,INSD:ES198251.1,
INSD:DR297956.1,INSD:DR297990.1,INSD:DR297961.1,
INSD:DR208231.1,INSD:ES111214.1,INSD:EG471519.1,
INSD:EL130910.1,INSD:BP815970.1,INSD:BP825218.1,
INSD:EL167142.1,INSD:ES009531.1,INSD:EH818383.1,
INSD:DR208230.1,INSD:ES104990.1,INSD:DR297971.1,
INSD:DR297985.1,INSD:DR297952.1,INSD:DR208233.1,
INSD:DR297982.1,INSD:BP641848.1,INSD:DR297988.1,
INSD:ES070562.1,INSD:DR297984.1,INSD:DR297969.1,
INSD:ES215865.1,INSD:EG458297.1,INSD:AV538391.1,
INSD:DR297964.1,INSD:ES158977.1,INSD:DR297976.1,
INSD:AV539018.1,INSD:EH858312.1,INSD:DR297951.1,
INSD:EL173179.1,INSD:DR297977.1,INSD:DR297965.1,
INSD:DR297966.1,INSD:ES020296.1,INSD:DR297954.1,
INSD:EL084504.1,INSD:ES157936.1,INSD:EL148383.1,
INSD:DR379364.1,INSD:DR297967.1,INSD:DR297958.1,
INSD:DR297953.1,INSD:DR297983.1,INSD:DR297968.1,
INSD:EG471518.1,INSD:EL183229.1,INSD:ES091084.1,
INSD:EL154106.1,INSD:ES055085.1,INSD:AV531122.1,
INSD:DR297963.1,INSD:ES142090.1,INSD:CB258435.1,
INSD:CB074180.1,INSD:EL104194.1,INSD:ES189819.1,
INSD:DR297979.1,INSD:DR297970.1,INSD:DR297973.1,
INSD:DR297960.1,INSD:DR208232.1,INSD:DR297975.1,
INSD:EL173117.1,INSD:ES197529.1,INSD:DR297972.1,
INSD:EG528806.1,INSD:BP644113.1,INSD:DR232298.1,
INSD:DR297957.1,INSD:AV551356.1,INSD:DR297986.1,
INSD:ES033494.1,INSD:ES009838.1,INSD:DR297987.1,
INSD:DR297980.1,INSD:EG458286.1,INSD:DR375630.1,
INSD:ES099639.1,INSD:EL255451.1,INSD:DR297959.1,
INSD:BP822571.1,INSD:DR297955.1,INSD:BP813484.1,
INSD:BP814521.1,INSD:ES161907.1,INSD:DR297989.1,
INSD:ES007382.1,INSD:AV555897.1,INSD:DR377961.1,
INSD:BP831900.1,INSD:DR381416.1,INSD:EH979719.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX828590.1,INSD:BX827918.1,INSD:BX841518.1,
INSD:BX827183.1,INSD:BX828989.1,INSD:BX828575.1,
INSD:BX828785.1,INSD:BX829261.1,INSD:AY089122.1"
/note="small nuclear ribonucleoprotein associated protein
B (smB); CONTAINS InterPro DOMAIN/s: Like-Sm
ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small
ribonucleoprotein associated, SmB/SmN
(InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM)
domain, eukaryotic/archaea-type (InterPro:IPR006649),
Like-Sm ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: Small nuclear ribonucleoprotein family protein
(TAIR:AT5G44500.2); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink)."
/db_xref="TAIR:AT4G20440"
/db_xref="Araport:AT4G20440"
BEGIN
1 MSMSKSSKML QFINYRMRVT IQDGRQLVGK FMAFDRHMNL VLGDCEEFRK LPPAKGKKIN
61 EEREDRRTLG LVLLRGEEVI SMTVEGPPPP EESRAKAGSA AAVAGPGIGR AAGRGVPTGP
121 LVQAQPGLSG PVRGVGGPAP GMMQPQISRP PQLSAPPIIR PPGQMLPPPP FGGQGPPMGR
181 GPPPPYGMRP PPQQFSGPPP PQYGQRPMIP PPGGMMRGPP PPPHGMQGPP PPRPGMPPAP
241 GGFAPPRPGM PPHNQQQ
//