LOCUS AEE84322.1 210 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana LSD1 zinc finger family protein protein.
ACCESSION CP002687-3565
PROTEIN_ID AEE84322.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="LSD1"
/locus_tag="AT4G20380"
/gene_synonym="F9F13.30"
/gene_synonym="F9F13_30"
/gene_synonym="LESION SIMULATING DISEASE"
/gene_synonym="LESION SIMULATING DISEASE 1"
/inference="Similar to RNA sequence,
EST:INSD:ES088020.1,INSD:ES181994.1,INSD:EL315088.1,
INSD:DR208376.1,INSD:ES060398.1,INSD:EL203210.1,
INSD:ES130634.1,INSD:EH885742.1,INSD:EL136318.1,
INSD:BP659824.1,INSD:EL141964.1,INSD:ES093954.1,
INSD:EL252700.1,INSD:EH939996.1,INSD:AV536955.1,
INSD:DR208369.1,INSD:EH883877.1,INSD:ES077540.1,
INSD:EL293822.1,INSD:BP622134.1,INSD:ES155338.1,
INSD:ES051314.1,INSD:H76011.1,INSD:EL177633.1,
INSD:BP834303.1,INSD:BP671862.1,INSD:AV542851.1,
INSD:EH842946.1,INSD:BP867530.1,INSD:BP624399.1,
INSD:EL988474.1,INSD:ES045939.1,INSD:ES046682.1,
INSD:ES153093.1,INSD:DR208379.1,INSD:AV813599.1,
INSD:DR208372.1,INSD:EL004234.1,INSD:DR208375.1,
INSD:EL312409.1,INSD:EL321396.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX826741.1"
/note="LSD1 zinc finger family protein; FUNCTIONS IN:
sequence-specific DNA binding transcription factor
activity; INVOLVED IN: in 11 processes; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type
(InterPro:IPR005735); BEST Arabidopsis thaliana protein
match is: lsd one like 1 (TAIR:AT1G32540.1); Has 317 Blast
hits to 247 proteins in 38 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0;
Other Eukaryotes - 44 (source: NCBI BLink)."
/db_xref="TAIR:AT4G20380"
/db_xref="Araport:AT4G20380"
intron_pos 42:1 (1/7)
intron_pos 77:1 (2/7)
intron_pos 88:0 (3/7)
intron_pos 103:1 (4/7)
intron_pos 150:0 (5/7)
intron_pos 174:0 (6/7)
intron_pos 198:0 (7/7)
BEGIN
1 MQDQLVCHGC RNLLMYPRGA SNVRCALCNT INMVPPPPPP HDMAHIICGG CRTMLMYTRG
61 ASSVRCSCCQ TTNLVPESSF TLLFDNILKV LKTKLLDGPG GLAHSNQVAH APSSQVAQIN
121 CGHCRTTLMY PYGASSVKCA VCQFVTNVNM SNGRVPLPTN RPNGTACPPS TSTSTPPSQT
181 QTVVVENPMS VDESGKLVSN VVVGVTTDKK
//