LOCUS AEE84204.1 816 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nucleotide/nucleic acid binding protein
protein.
ACCESSION CP002687-3385
PROTEIN_ID AEE84204.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G19610"
/gene_synonym="F24J7.162"
/gene_synonym="F24J7_162"
/inference="Similar to RNA sequence,
EST:INSD:EG527404.1,INSD:EG527403.1,INSD:EG455668.1,
INSD:EG455667.1,INSD:EG527262.1,INSD:EG455662.1,
INSD:ES127280.1,INSD:EG527406.1,INSD:EG527261.1,
INSD:EL979413.1,INSD:EG455661.1,INSD:EG527402.1,
INSD:EG501336.1,INSD:EG501345.1,INSD:EG501340.1,
INSD:EG501341.1,INSD:EL060180.1,INSD:EH886740.1,
INSD:EG501343.1,INSD:EL967145.1,INSD:EG527266.1,
INSD:EG527405.1,INSD:EG455660.1,INSD:ES214897.1,
INSD:EG501346.1,INSD:EG527398.1,INSD:EG527397.1,
INSD:EG455665.1,INSD:EG527265.1,INSD:EG455670.1,
INSD:EG455658.1,INSD:EG501347.1,INSD:EG527391.1,
INSD:EG455664.1,INSD:ES181315.1,INSD:EG501337.1"
/note="nucleotide binding;nucleic acid binding;RNA
binding; FUNCTIONS IN: RNA binding, nucleotide binding,
nucleic acid binding; INVOLVED IN: biological_process
unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), RNA recognition, domain 1
(InterPro:IPR003954); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G19610"
/db_xref="Araport:AT4G19610"
intron_pos 1:2 (1/14)
intron_pos 37:2 (2/14)
intron_pos 76:0 (3/14)
intron_pos 306:2 (4/14)
intron_pos 350:2 (5/14)
intron_pos 380:2 (6/14)
intron_pos 420:0 (7/14)
intron_pos 528:0 (8/14)
intron_pos 549:2 (9/14)
intron_pos 601:0 (10/14)
intron_pos 636:0 (11/14)
intron_pos 670:0 (12/14)
intron_pos 728:0 (13/14)
intron_pos 773:0 (14/14)
BEGIN
1 MSRICVKNLP KHVKEDQLRD HFSQKGEITD AKLMRSNDGK SRQFGFIGFR SAQEAQQAIK
61 YFNNTYLGTS LIIVEIAHKV GDENAPRPWS RLSHKKEEEA KKSSSEGLKD GNAKGGKKRK
121 AEVDDPEFQE FLEVHQRSKS KIWSNDMSIP PAPEETGKEK VLVKKADEQI VSNGVEPKKA
181 KKSSDTEKTK KSKVVAASDD VSDMEYFKSR IKKNLSDSES DNESEDSSED EAGDDDGKAE
241 TDGQDADIRY FPIDGDVEAG GVGKDDDGDA MEVEGDGKVA QESKAVSDDV LDTGRLFVRN
301 LPYTATEEEL MEHFSTFGKI SEVHLVLDKE TKRSRGIAYI LYLIPECAAR AMEELDNSSF
361 QGRLLHILPA KHRETSDKQV NDTSNLPKTF KQKREEQRKA SEAGGDTKAW NSLFMRPDTI
421 LENIVRVYGV SKSELLDREA EDPAVRLALG ETKVIAETKE ALAKAGVNVT SLEKFATRNG
481 DEKNRSKHIL LVKNLPFAST EKELAQMFGK FGSLDKIILP PTKTMALAVF LEPAEARAAL
541 KGMAYKRYKD APLYLEWAPG NILEPKNLPD TNEERSDIEE NGVRRVNLEQ QVEIDPDVTE
601 SNVLNVKNLS FKTTDEGLKK HFTKLVKQGK ILSVTIIKHK KNEKYLSSGY GFVEFDSVET
661 ATSVYRDLQG TVLDGHALIL RFCENKRSDK VGKDSNKDKP CTKLHVKNIA FEATKRELRQ
721 LFSPFGQIKS MRLPKKNIGQ YAGYAFVEFV TKQEALNAKK ALASTHFYGR HLVLEWANDD
781 NSMEAIRKRS AAKFDEENDN ARKRKSSKAV EGKNEV
//