LOCUS AEE84189.1 1034 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana VPS54 protein.
ACCESSION CP002687-3354
PROTEIN_ID AEE84189.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="VPS54"
/locus_tag="AT4G19490"
/gene_synonym="ARABIDOPSIS THALIANA VPS54 HOMOLOG"
/gene_synonym="ATVPS54"
/gene_synonym="F24J7.50"
/gene_synonym="F24J7_50"
/inference="Similar to RNA sequence,
EST:INSD:EH897582.1,INSD:EL220233.1,INSD:EL030630.1,
INSD:EG513993.1,INSD:AV547507.1,INSD:BP811179.1,
INSD:ES101936.1,INSD:EG517870.1,INSD:AV522992.1,
INSD:EH915080.1,INSD:BP615772.1,INSD:EH829225.1,
INSD:EH818738.1,INSD:BP621360.1,INSD:AV528559.1,
INSD:EL085906.1,INSD:ES181166.1,INSD:BP591583.1,
INSD:EL281285.1,INSD:AV528469.1,INSD:AV830391.1,
INSD:AV529340.1,INSD:EH946323.1"
/note="VPS54; INVOLVED IN: retrograde transport, endosome
to Golgi; LOCATED IN: chloroplast; EXPRESSED IN: male
gametophyte; EXPRESSED DURING: L mature pollen stage;
CONTAINS InterPro DOMAIN/s: Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515),
Vps54-like (InterPro:IPR012501); Has 471 Blast hits to 377
proteins in 168 species: Archae - 2; Bacteria - 4; Metazoa
- 149; Fungi - 188; Plants - 45; Viruses - 0; Other
Eukaryotes - 83 (source: NCBI BLink)."
/db_xref="TAIR:AT4G19490"
/db_xref="Araport:AT4G19490"
intron_pos 279:0 (1/17)
intron_pos 300:0 (2/17)
intron_pos 326:2 (3/17)
intron_pos 367:0 (4/17)
intron_pos 392:0 (5/17)
intron_pos 443:1 (6/17)
intron_pos 473:0 (7/17)
intron_pos 558:2 (8/17)
intron_pos 616:0 (9/17)
intron_pos 644:0 (10/17)
intron_pos 777:2 (11/17)
intron_pos 829:0 (12/17)
intron_pos 856:1 (13/17)
intron_pos 883:0 (14/17)
intron_pos 937:0 (15/17)
intron_pos 959:2 (16/17)
intron_pos 986:2 (17/17)
BEGIN
1 MDSHPSLMGR SITNSNRSSL DLGRPSSSSS SSPSPLTKSI SDASSQSLSS ILNNPHGGKS
61 GVYGSDASWV GWWSSSTFVA PAEFAPVAST KLPGSELTRS DFHGYVSSIS ESHGRFEDIR
121 KHTREESCGF DQESHVSGLA ACLREVPSLY FKEDFALEDG ATFRSACPFS SLNENLALQE
181 KLSQYLDVVE LHLVKEISVR SDSFFEAQGQ LQDLNVKIVE GCSRIRELKE TIRLLDRNLV
241 DSARQIQELS STRINMLELQ RKLRLILYVN QALSALKLLV ASADCAGALD ITDDLQNLLA
301 GDELTGLYCF RHLRDHVTSS IDSINSILTS EFMRISIHDT GEIDVLILSA ANIRGSISSN
361 GNTGEEVKLE EEDTSTLCDR LLPLVIGLLR TAKFPSILRM YRDTLTSEMK NAIKKAVADL
421 LPILVARSLE SDFSHGERSV DDGGGLSLAS KLRTLSSEAF VNLLTAIFKI VQAHLVRASE
481 VKKAIEWILC NIDGHYAADS VAAAIAVGAV AAETAQEIGF QGGSLVSSPL GKATSKAPPL
541 QGKSSDASSL MNMSRNFRAD VLRENTEAVF AACEVTHGRW AKLLGVRALL HPKLKLQEFM
601 SIYDLTQEFI TSTEKIGGRL GSSIRGTLQS QAKAFVDSQH ESRMTKLKAV LDQETWDEID
661 VPEEFQSIIS SLFASQRLIS GKVDDADLNS YHSNRLPLNG SLTSGSGDQN SELRNEKSES
721 SEGSVVSDAQ VKPTVSPESL ERSKAGVSSA TNNQSNQKAH GKSNLFYQGV GYHMVNCGLI
781 LLKMLSEYID MNNSLPALSS EIVLRVVEVL RFFNTRTCQL VLGAGAMQVS GLKSIKAKHL
841 ALASQVIDFT YTIIPETRRI LFSKVPETRK PLLSVEIDKV AQDFRIHRDE IYTKLVQIMR
901 ERLLAHLHGL PKVVEGWNRP PDTNKQTKEF AWPLTREVGY LHRVLSETLH EADVQAIFRQ
961 VISIIHTQTS QTLTNLEISS TEAKKRLKLH VELILKCIRS LPSDNANQSD IPNWGQLDEF
1021 FAEHFREEEA GEAE
//