LOCUS AEE84154.1 595 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nine-cis-epoxycarotenoid dioxygenase
4 protein.
ACCESSION CP002687-3307
PROTEIN_ID AEE84154.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="NCED4"
/locus_tag="AT4G19170"
/gene_synonym="carotenoid cleavage dioxygenase 4"
/gene_synonym="CCD4"
/gene_synonym="nine-cis-epoxycarotenoid dioxygenase 4"
/gene_synonym="T18B16.140"
/gene_synonym="T18B16_140"
/inference="Similar to RNA sequence,
EST:INSD:EH872837.1,INSD:EH945158.1,INSD:EL169054.1,
INSD:EL149672.1,INSD:EL022332.1,INSD:EG522014.1,
INSD:DR220797.1,INSD:EH968210.1,INSD:AV810497.1,
INSD:EG522015.1,INSD:EL295596.1,INSD:CB255874.1,
INSD:EL198192.1,INSD:EL069355.1,INSD:EL053333.1,
INSD:EL124770.1,INSD:EL339997.1,INSD:EL015355.1,
INSD:EL179536.1,INSD:AV814406.1,INSD:BP792871.1,
INSD:EH938929.1,INSD:EG493979.1,INSD:EL259760.1,
INSD:EL240527.1,INSD:AV818327.1,INSD:AV808876.1,
INSD:EL127996.1,INSD:EH953773.1,INSD:AV816041.1,
INSD:EH898935.1,INSD:EL047924.1,INSD:BU635323.1,
INSD:EL117762.1,INSD:AV801671.1,INSD:EH823535.1,
INSD:EH857317.1,INSD:AV808834.1,INSD:EH862829.1,
INSD:EH944164.1,INSD:BP641568.1,INSD:EL230231.1,
INSD:EH982693.1,INSD:EH880050.1,INSD:AV811568.1,
INSD:AV807823.1,INSD:BP777333.1,INSD:EL074457.1,
INSD:EH879019.1,INSD:EH981484.1,INSD:EG493980.1,
INSD:AV810666.1,INSD:AV813755.1,INSD:AV807376.1,
INSD:AV802100.1,INSD:EH897343.1,INSD:BP562505.2,
INSD:EL212586.1,INSD:AV816428.1,INSD:EL099663.1,
INSD:EL076088.1,INSD:EL197242.1,INSD:EH872755.1,
INSD:EL129838.1,INSD:EL054364.1,INSD:EL080215.1,
INSD:EL084565.1,INSD:AI997269.1,INSD:BP668423.1,
INSD:EL075025.1,INSD:EH841228.1,INSD:BP785344.1,
INSD:EH945094.1,INSD:EL052536.1,INSD:EG494970.1,
INSD:EH933938.1,INSD:EL261381.1,INSD:BP562398.2,
INSD:EH977218.1,INSD:EH808239.1,INSD:EH962595.1,
INSD:EG494969.1,INSD:EL257488.1,INSD:BU635226.1,
INSD:EL064041.1,INSD:EL148346.1,INSD:EL249063.1,
INSD:EH914163.1,INSD:EH846532.1,INSD:EL073632.1,
INSD:EH860809.1,INSD:EL266613.1,INSD:EL098057.1,
INSD:AV799343.1,INSD:AV805449.1,INSD:EH952898.1,
INSD:EL007264.1,INSD:EL217864.1,INSD:EL292021.1,
INSD:EL073329.1,INSD:BP863804.1,INSD:EH898232.1,
INSD:EL316865.1,INSD:AV441720.1,INSD:EH967677.1,
INSD:EH900221.1,INSD:EL039939.1,INSD:AV803250.1,
INSD:AV808241.1,INSD:EL267038.1,INSD:EH953913.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT008785.1,INSD:AY136353.1,INSD:AK227175.1,
INSD:BX826832.1,INSD:AY056789.1"
/note="nine-cis-epoxycarotenoid dioxygenase 4 (NCED4);
LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 16
plant structures; EXPRESSED DURING: 9 growth stages;
CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase
(InterPro:IPR004294); BEST Arabidopsis thaliana protein
match is: nine-cis-epoxycarotenoid dioxygenase 5
(TAIR:AT1G30100.1); Has 2918 Blast hits to 2864 proteins
in 491 species: Archae - 16; Bacteria - 796; Metazoa -
323; Fungi - 173; Plants - 887; Viruses - 0; Other
Eukaryotes - 723 (source: NCBI BLink)."
/db_xref="TAIR:AT4G19170"
/db_xref="Araport:AT4G19170"
BEGIN
1 MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL
61 HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP SRPSVDPKHV LSDNFAPVLD
121 ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS
181 RYVKTYKYNV EKQTGAPVMP NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS
241 LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301 RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD
361 LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF NIIHAINAWD EDDGNSVVLI
421 APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV
481 YAAIGDPMPK ISGVVKLDVS KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG
541 YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
//