LOCUS AEE84108.1 181 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA ligase/cyclic nucleotide phosphodiesterase
family protein protein.
ACCESSION CP002687-3245
PROTEIN_ID AEE84108.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G18930"
/gene_synonym="F13C5.100"
/gene_synonym="F13C5_100"
/inference="Similar to RNA sequence,
EST:INSD:EL121807.1,INSD:EL117345.1,INSD:EL299206.1,
INSD:BP563437.1,INSD:BP650814.1,INSD:BP574041.1,
INSD:EL067296.1,INSD:EG528929.1,INSD:ES054773.1,
INSD:EH865884.1,INSD:EL301384.1,INSD:AI998711.1,
INSD:ES137484.1,INSD:AA712926.1,INSD:EL977661.1,
INSD:EH910379.1,INSD:EH817886.1,INSD:EL299085.1,
INSD:EH930930.1,INSD:EL052973.1,INSD:EG528930.1,
INSD:EH832286.1,INSD:AV789939.1,INSD:EG525732.1,
INSD:ES199871.1,INSD:EH805456.1,INSD:ES085244.1,
INSD:CF652087.1,INSD:BP590455.1,INSD:EH971923.1,
INSD:EH875143.1,INSD:BP825487.2,INSD:ES122330.1,
INSD:ES200256.1,INSD:EG508181.1,INSD:ES087753.1,
INSD:EL271212.1,INSD:ES067379.1,INSD:ES111266.1,
INSD:BP856171.1,INSD:EL181069.1,INSD:EL054564.1,
INSD:EL151709.1,INSD:BP625422.1,INSD:ES121974.1,
INSD:BP661692.1,INSD:EH846847.1,INSD:ES041616.1,
INSD:ES007604.1,INSD:EH907785.1,INSD:EL114861.1,
INSD:EL970508.1,INSD:EL302272.1,INSD:T04676.1,
INSD:ES025913.1,INSD:EL000246.1,INSD:EL993625.1,
INSD:BP570870.1,INSD:AV823910.1,INSD:EH881682.1,
INSD:ES119689.1,INSD:EH934368.1,INSD:AV784991.1,
INSD:EL988239.1,INSD:T76016.1,INSD:ES176257.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY081630.1,INSD:AY062822.1,INSD:BX829297.1,
INSD:Y11650.1,INSD:BX829213.1"
/note="RNA ligase/cyclic nucleotide phosphodiesterase
family protein; CONTAINS InterPro DOMAIN/s: RNA
ligase/cyclic nucleotide phosphodiesterase
(InterPro:IPR009097), 2',3'-cyclic-nucleotide
3'-phosphodiesterase (InterPro:IPR012386); BEST
Arabidopsis thaliana protein match is: RNA ligase/cyclic
nucleotide phosphodiesterase family protein
(TAIR:AT4G18940.1); Has 112 Blast hits to 112 proteins in
29 species: Archae - 3; Bacteria - 12; Metazoa - 0; Fungi
- 8; Plants - 58; Viruses - 0; Other Eukaryotes - 31
(source: NCBI BLink)."
/db_xref="TAIR:AT4G18930"
/db_xref="Araport:AT4G18930"
intron_pos 97:0 (1/2)
intron_pos 115:1 (2/2)
BEGIN
1 MEEVKKDVYS VWALPDEESE PRFKKLMEAL RSEFTGPRFV PHVTVAVSAY LTADEAKKMF
61 ESACDGLKAY TATVDRVSTG TFFFQCVFLL LQTTPEVMEA GEHCKNHFNC STTTPYMPHL
121 SLLYAELTEE EKKNAQEKAY TLDSSLDGLS FRLNRLALCK TDTEDKTLET WETVAVCNLN
181 P
//