LOCUS AEE83906.1 360 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Hyaluronan / mRNA binding family protein.
ACCESSION CP002687-2986
PROTEIN_ID AEE83906.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G17520"
/gene_synonym="DL4795W"
/gene_synonym="FCAALL.142"
/inference="Similar to RNA sequence,
EST:INSD:BP595232.1,INSD:EL980130.1,INSD:AI993777.1,
INSD:BP849409.1,INSD:BP851588.1,INSD:BP824804.1,
INSD:DR214625.1,INSD:DR214620.1,INSD:BP852195.1,
INSD:BP589981.1,INSD:ES102516.1,INSD:EL971377.1,
INSD:DR214619.1,INSD:AV820826.1,INSD:ES043208.1,
INSD:AV534184.1,INSD:BP666054.1,INSD:ES163332.1,
INSD:EL031319.1,INSD:AV539171.1,INSD:BP669257.1,
INSD:BP815239.1,INSD:CB260432.1,INSD:ES005136.1,
INSD:EG445431.1,INSD:ES113311.1,INSD:ES216366.1,
INSD:BP780540.1,INSD:Z29204.1,INSD:AV563395.1,
INSD:EL971165.1,INSD:EL058121.1,INSD:BP838464.1,
INSD:ES090369.1,INSD:BP780115.1,INSD:EL983283.1,
INSD:EL972549.1,INSD:BP627712.1,INSD:EL108478.1,
INSD:BP622126.1,INSD:AV538546.1,INSD:BP835693.1,
INSD:BP615363.1,INSD:BP594970.1,INSD:BE038092.1,
INSD:AV544985.1,INSD:AV551573.1,INSD:BP664710.1,
INSD:BP602609.1,INSD:BP613138.1,INSD:T43496.1,
INSD:AV558789.1,INSD:ES119553.1,INSD:BP641593.1,
INSD:Z30907.1,INSD:BP633774.1,INSD:BP858387.1,
INSD:BP670175.1,INSD:EL246596.1,INSD:ES214513.1,
INSD:R65494.1,INSD:ES014770.1,INSD:H36384.1,
INSD:AI995866.1,INSD:BP630280.1,INSD:ES076216.1,
INSD:BP642523.1,INSD:BP837114.1,INSD:EL088406.1,
INSD:DR370533.1,INSD:AV538991.1,INSD:CB263771.1,
INSD:EL972047.1,INSD:DR375481.1,INSD:EL332352.1,
INSD:EL984476.1,INSD:BP623382.1,INSD:BP831827.1,
INSD:DR228298.1,INSD:EL008699.1,INSD:DR214621.1,
INSD:AV542523.1,INSD:BP563493.1,INSD:BP610756.1,
INSD:EL035651.1,INSD:ES105520.1,INSD:BP600252.1,
INSD:BP865631.1,INSD:EL970363.1,INSD:ES137595.1,
INSD:EH965775.1,INSD:BP641979.1,INSD:AV560032.1,
INSD:BP830889.1,INSD:BP849433.1,INSD:EL002529.1,
INSD:DR214626.1,INSD:AV539452.1,INSD:ES093929.1,
INSD:AV548481.1,INSD:BE662814.1,INSD:AV564582.1,
INSD:AV525122.1,INSD:AV785737.1,INSD:AV541806.1,
INSD:AV534990.1,INSD:EL983567.1,INSD:EL973810.1,
INSD:BP611421.1,INSD:AV786863.1,INSD:BP636739.1,
INSD:ES174358.1,INSD:AV551401.1,INSD:EH911606.1,
INSD:BP654005.1,INSD:EG440040.1,INSD:BP631214.1,
INSD:AV541358.1,INSD:BP822861.1,INSD:ES060461.1,
INSD:AV802526.1,INSD:ES059207.1,INSD:BP835084.1,
INSD:BP658755.1,INSD:BP850179.1,INSD:BP835945.1,
INSD:BP835948.1,INSD:EH927589.1,INSD:BP847329.1,
INSD:EL982752.1,INSD:ES031095.1,INSD:ES165184.1,
INSD:AV782304.1,INSD:ES050979.1,INSD:ES160026.1,
INSD:BP817309.1,INSD:AV441828.1,INSD:ES008911.1,
INSD:BP848071.1,INSD:ES083973.1,INSD:BP853261.1,
INSD:BP656865.1,INSD:EL991529.1,INSD:BP591210.1,
INSD:BE522184.1,INSD:EH815009.1,INSD:ES191127.1,
INSD:BP846213.1,INSD:ES202245.1,INSD:BP631455.1,
INSD:BP574396.1,INSD:BP658560.1,INSD:DR214623.1,
INSD:AV518908.1,INSD:AV788223.1,INSD:BP650539.1,
INSD:BP665406.1,INSD:BP829621.1,INSD:ES168867.1,
INSD:BP608632.1,INSD:DR214622.1,INSD:EL106058.1,
INSD:EH863598.1,INSD:BP627592.1,INSD:CB262024.1,
INSD:ES073355.1,INSD:ES113264.1,INSD:BP652777.1,
INSD:BP582167.1,INSD:DR214617.1,INSD:ES078467.1,
INSD:CD532236.1,INSD:DR214618.1,INSD:EL971791.1,
INSD:BP820465.1,INSD:DR344748.1,INSD:ES172151.1,
INSD:EL035107.1,INSD:AV539674.1,INSD:EL991524.1,
INSD:EL973075.1,INSD:BP814210.1,INSD:AV821765.1,
INSD:AV540195.1,INSD:AV796841.1,INSD:EL056806.1,
INSD:BP850086.1,INSD:EL984301.1,INSD:F15150.1,
INSD:AV826933.1,INSD:EL079454.1,INSD:EH953228.1,
INSD:EL998986.1,INSD:ES187800.1,INSD:EL969303.1,
INSD:BP579937.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY081262.1,INSD:AY057494.1,INSD:BT001153.1,
INSD:AY087413.1,INSD:BX827205.1"
/note="Hyaluronan / mRNA binding family; FUNCTIONS IN: RNA
binding; INVOLVED IN: biological_process unknown; LOCATED
IN: nucleus, peroxisome; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Stm1, N-terminal (InterPro:IPR019084),
Hyaluronan/mRNA-binding protein (InterPro:IPR006861); BEST
Arabidopsis thaliana protein match is: Hyaluronan / mRNA
binding family (TAIR:AT5G47210.1); Has 14577 Blast hits to
9436 proteins in 968 species: Archae - 15; Bacteria -
3155; Metazoa - 5443; Fungi - 1433; Plants - 1957; Viruses
- 142; Other Eukaryotes - 2432 (source: NCBI BLink)."
/db_xref="TAIR:AT4G17520"
/db_xref="Araport:AT4G17520"
intron_pos 51:1 (1/6)
intron_pos 149:2 (2/6)
intron_pos 171:2 (3/6)
intron_pos 215:0 (4/6)
intron_pos 268:0 (5/6)
intron_pos 285:0 (6/6)
BEGIN
1 MASVNPFDLL DDDAEDPSQI VASKPLKVVA PVQTAKSGKM PTKPPPPSQA VREARNAPGG
61 GRGAGRGGSY GRGGRGGNNR DSRNNDGPAN ENGYGGGYRR SEEGDGARRG GPVGGYRGDR
121 RGSYSNGGDS GDSERPRKNY DRHSRTAYGN EDKRDGAGRA NWGTTQDDIT PVTEESTAVV
181 DKNLTVEKQD GEGEATDAKN ETPAEKAEEK PEDKEMTLEE YEKVLEEKKK ALQATKVEER
241 KVDTKAFEAM QQLSSKKSNN DEVFIKLGTE KDKRITEREE KTRKSLSINE FLKPADGKSY
301 YRPRGGYQGG REGRGPREGN QRDGGRNLRE GGRNQRDGGA AAQAPTPAIG DSAQFPTLGK
//