LOCUS AEE83849.3 844 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana poly(U)-specific endoribonuclease-
B protein protein.
ACCESSION CP002687-2888
PROTEIN_ID AEE83849.3
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G17100"
/gene_synonym="DL4585C"
/gene_synonym="FCAALL.349"
/inference="similar to RNA sequence,
EST:INSD:EL161691.1,INSD:EH817984.1,INSD:BP652236.1,
INSD:ES030392.1,INSD:EH825794.1,INSD:EL333968.1,
INSD:BP647835.1,INSD:EL291494.1,INSD:ES193374.1,
INSD:EL107181.1,INSD:CK120848.1,INSD:AV828612.1,
INSD:EL065465.1,INSD:ES139296.1,INSD:EL297161.1,
INSD:BP654626.1,INSD:BP633223.1,INSD:EH968026.1,
INSD:BP593337.1,INSD:ES212950.1,INSD:EL213964.1,
INSD:BP654956.1,INSD:EL009505.1,INSD:EH977650.1,
INSD:CF653009.1,INSD:BP608818.1,INSD:EL257365.1,
INSD:EH964685.1,INSD:ES182050.1,INSD:BP811749.1,
INSD:BP610432.1,INSD:DR368712.1,INSD:BP811628.1,
INSD:AV556152.1,INSD:EL164628.1,INSD:EL328433.1,
INSD:BP600477.1,INSD:BP783372.1,INSD:ES121456.1,
INSD:AV440644.1,INSD:EL299033.1,INSD:EL304454.1,
INSD:EL018191.1,INSD:T04099.1,INSD:CB263917.1,
INSD:CK121772.1,INSD:EH914265.1,INSD:EH973006.1,
INSD:BP656086.1,INSD:EH897741.1,INSD:BP805711.1,
INSD:EH967071.1,INSD:EH836900.1,INSD:AV802112.1,
INSD:EL293374.1,INSD:EH929065.1,INSD:EL097839.1,
INSD:AV442524.1,INSD:EH850651.1,INSD:EL227859.1,
INSD:EH877685.1,INSD:EH945973.1,INSD:EL271058.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY093205.1,INSD:BT000202.1"
/note="CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU
(InterPro:IPR018998); Has 943 Blast hits to 770 proteins
in 162 species: Archae - 0; Bacteria - 61; Metazoa - 472;
Fungi - 40; Plants - 78; Viruses - 35; Other Eukaryotes -
257 (source: NCBI BLink)."
/db_xref="TAIR:AT4G17100"
/db_xref="Araport:AT4G17100"
intron_pos 44:2 (1/7)
intron_pos 68:2 (2/7)
intron_pos 88:2 (3/7)
intron_pos 107:2 (4/7)
intron_pos 131:2 (5/7)
intron_pos 334:2 (6/7)
intron_pos 358:2 (7/7)
BEGIN
1 MSVIAHVDHG KSTLTDSLVA AAGIIAQETA GDVRMTDTRA DEAERGITIK STGISLYYEM
61 TDASLKSFTG ARDGNEYLIN LIDSPGHVDF SSEVTAALRI TDGALVVVDC IEGVCVQTET
121 VLRQSLGERI RPVLTVNKMD RCFLELKVDG EEAYQNFQRV IENANVIMAT HEDPLLGDVQ
181 VYPEKGTVAF SAGLHGWAFT LTNFAKMYAS KFGVSESKMM ERLWGENFFD SATRKWTTKT
241 GSPTCKRGFV QFCYEPIKIM INTCMNDQKD KLWPMLEKLG IQMKPDEKEL MGKPLMKRVM
301 QAWLPASTAL LEMMIFHLPS PYTAQRYRVE NLYEGPLDDK YAAAIRNCDP DGPLMLYVSK
361 MIPASDKGRF FAFGRVFSGT VSTGMKVRIM GPNYVPGEKK DLYVKSVQRT VIWMGKKQET
421 VEDVPCGNTV AMVGLDQFIT KNGTLTNEKE VDAHPLRAMK FSVSPVVRVA VKCKLASDLP
481 KLVEGLKRLA KSDPMVLCTM EESGEHIVAG AGELHIEICV KDLQDFMGGA DIIVSDPVVS
541 LRETVFERSC RTVMSKSPNK HNRLYMEARP MEDGLAEAID EGRIGPSDDP KIRSKILAEE
601 FGWDKDLAKK IWAFGPDTTG PNMVVDMCKG VQYLNEIKDS VVAGFQWASK EGPLAEENMR
661 GVCYEVCDVV LHADAIHRGC GQMISTARRA IYASQLTAKP RLLEPVYMVE IQAPEGALGG
721 IYSVLNQKRG HVFEEMQRPG TPLYNIKAYL PVVESFGFSG QLRAATSGQA FPQCVFDHWD
781 MMSSDPLETG SQAATLVADI RKRKGLKLQM TPLSDYEDKL GNLJCVIMRN AATGGNLJCV
841 IATG
//