LOCUS AEE83842.1 305 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana CLP protease R subunit 4 protein.
ACCESSION CP002687-2881
PROTEIN_ID AEE83842.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="CLPR4"
/locus_tag="AT4G17040"
/gene_synonym="CLP protease R subunit 4"
/gene_synonym="DL4550C"
/gene_synonym="FCAALL.413"
/gene_synonym="happy on norflurazon 5"
/gene_synonym="HON5"
/inference="Similar to RNA sequence,
EST:INSD:CA963918.1,INSD:EL153595.1,INSD:DR231664.1,
INSD:DR231631.1,INSD:EL094601.1,INSD:BP795690.1,
INSD:EL281052.1,INSD:DR231635.1,INSD:AV565334.1,
INSD:EH833494.1,INSD:EL083496.1,INSD:DR231644.1,
INSD:DR231662.1,INSD:BP597312.1,INSD:DR231645.1,
INSD:EL320619.1,INSD:EL324831.1,INSD:EL180668.1,
INSD:AA651358.1,INSD:EH991691.1,INSD:BP835737.1,
INSD:AV558304.1,INSD:DR231622.1,INSD:BP779564.1,
INSD:EL244348.1,INSD:DR231643.1,INSD:EG526310.1,
INSD:AV822948.1,INSD:EL989732.1,INSD:CB261199.1,
INSD:ES204371.1,INSD:EL134578.1,INSD:DR231608.1,
INSD:EG502051.1,INSD:DR231636.1,INSD:DR231646.1,
INSD:EH880204.1,INSD:DR231632.1,INSD:AV518857.1,
INSD:H37457.1,INSD:ES107832.1,INSD:BP587232.1,
INSD:CB252393.1,INSD:DR231629.1,INSD:DR232252.1,
INSD:AV522053.1,INSD:EH848933.1,INSD:EL013320.1,
INSD:DR231660.1,INSD:EL150328.1,INSD:DR231600.1,
INSD:BP804184.1,INSD:DR231652.1,INSD:DR231602.1,
INSD:EL015394.1,INSD:DR231639.1,INSD:EL253426.1,
INSD:DR231599.1,INSD:ES123095.1,INSD:DR231610.1,
INSD:DR231596.1,INSD:AV798067.1,INSD:EH851832.1,
INSD:EH812972.1,INSD:DR231595.1,INSD:BP631128.1,
INSD:BP867238.1,INSD:DR231637.1,INSD:EH867806.1,
INSD:EH910230.1,INSD:ES020754.1,INSD:DR231670.1,
INSD:DR231658.1,INSD:DR231659.1,INSD:DR231605.1,
INSD:DR231621.1,INSD:CB258661.1,INSD:EL022261.1,
INSD:EL048105.1,INSD:DR231612.1,INSD:DR231603.1,
INSD:EL317807.1,INSD:DR231642.1,INSD:AV803249.1,
INSD:DR231607.1,INSD:EG447364.1,INSD:BP867983.1,
INSD:AV806832.1,INSD:DR226213.1,INSD:DR231613.1,
INSD:EL278969.1,INSD:DR231625.1,INSD:DR231640.1,
INSD:DR231627.1,INSD:DR231623.1,INSD:EL313788.1,
INSD:EH865167.1,INSD:DR231661.1,INSD:EH888760.1,
INSD:DR231650.1,INSD:EL035872.1,INSD:DR377758.1,
INSD:DR231614.1,INSD:EL331238.1,INSD:ES028618.1,
INSD:DR231672.1,INSD:DR231668.1,INSD:DR231618.1,
INSD:EH945543.1,INSD:EL108098.1,INSD:DR231609.1,
INSD:DR231592.1,INSD:DR231647.1,INSD:DR231653.1,
INSD:EG526312.1,INSD:EL020943.1,INSD:EL066365.1,
INSD:DR231655.1,INSD:AV440574.1,INSD:DR231667.1,
INSD:DR231634.1,INSD:DR231615.1,INSD:DR231649.1,
INSD:EH988403.1,INSD:DR231593.1,INSD:BP793320.1,
INSD:EH922638.1,INSD:EL029714.1,INSD:AU238341.2,
INSD:DR231669.1,INSD:DR375636.1,INSD:DR231648.1,
INSD:EH947216.1,INSD:DR231594.1,INSD:ES191723.1,
INSD:ES138203.1,INSD:AV527354.1,INSD:EL290715.1,
INSD:AV787847.1,INSD:AV789614.1,INSD:ES141806.1,
INSD:DR231598.1,INSD:DR231638.1,INSD:AV531431.1,
INSD:EL108158.1,INSD:AV815221.1,INSD:EL020214.1,
INSD:EL056783.1,INSD:EL203777.1,INSD:DR231617.1,
INSD:EH943107.1,INSD:BP813930.1,INSD:DR231665.1,
INSD:BU635174.1,INSD:EL979060.1,INSD:ES040398.1,
INSD:EH935878.1,INSD:DR231616.1,INSD:EL240908.1,
INSD:EL192139.1,INSD:AV783003.1,INSD:DR231626.1,
INSD:DR231624.1,INSD:EG502050.1,INSD:DR231606.1,
INSD:ES179541.1,INSD:BX840076.1,INSD:BP629619.1,
INSD:DR231604.1,INSD:DR231630.1,INSD:EH870065.1,
INSD:DR231597.1,INSD:AV557025.1,INSD:DR231628.1,
INSD:AV796008.1,INSD:BP663920.1,INSD:DR231663.1,
INSD:DR231654.1,INSD:DR231620.1,INSD:DR231671.1,
INSD:DR231641.1,INSD:EH818482.1,INSD:EH930569.1,
INSD:AV810400.1,INSD:BU634963.1,INSD:EH816484.1,
INSD:EH932913.1,INSD:BP560774.1,INSD:EH969802.1,
INSD:EL329513.1,INSD:AV441159.1,INSD:EL195276.1,
INSD:DR231619.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT000050.1,INSD:AK117499.1,INSD:AY081275.1,
INSD:BX826645.1,INSD:AY087492.1"
/note="CLP protease R subunit 4 (CLPR4); FUNCTIONS IN:
serine-type endopeptidase activity; INVOLVED IN:
proteolysis; LOCATED IN: plastid stroma, chloroplast,
chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP
(InterPro:IPR001907); BEST Arabidopsis thaliana protein
match is: ATP-dependent caseinolytic (Clp)
protease/crotonase family protein (TAIR:AT1G09130.3); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="TAIR:AT4G17040"
/db_xref="Araport:AT4G17040"
intron_pos 90:0 (1/6)
intron_pos 158:0 (2/6)
intron_pos 176:2 (3/6)
intron_pos 219:0 (4/6)
intron_pos 245:0 (5/6)
intron_pos 283:0 (6/6)
BEGIN
1 MEVAAATATS FTTLRARTSA IIPSSTRNLR SKPRFSSSSS LRASLSNGFL SPYTGGSISS
61 DLCGAKLRAE SLNPLNFSSS KPKRGVVTMV IPFSKGSAHE QPPPDLASYL FKNRIVYLGM
121 SLVPSVTELI LAEFLYLQYE DEEKPIYLYI NSTGTTKNGE KLGYDTEAFA IYDVMGYVKP
181 PIFTLCVGNA WGEAALLLTA GAKGNRSALP SSTIMIKQPI ARFQGQATDV EIARKEIKHI
241 KTEMVKLYSK HIGKSPEQIE ADMKRPKYFS PTEAVEYGII DKVVYNERGS QDRGVVSDLK
301 KAQLI
//