LOCUS AEE83650.1 187 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA binding protein protein.
ACCESSION CP002687-2587
PROTEIN_ID AEE83650.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G15770"
/gene_synonym="DL3925W"
/gene_synonym="FCAALL.377"
/inference="Similar to RNA sequence,
EST:INSD:DR303751.1,INSD:EL151541.1,INSD:U74140.1,
INSD:DR303754.1,INSD:EG457026.1,INSD:EL998397.1,
INSD:EG457031.1,INSD:EL049340.1,INSD:DR371450.1,
INSD:EG428152.1,INSD:ES209126.1,INSD:DR303759.1,
INSD:Z27278.1,INSD:EL294513.1,INSD:DR303758.1,
INSD:DR303757.1,INSD:DR303753.1,INSD:EG464120.1,
INSD:EL142972.1,INSD:EH894723.1,INSD:Z29906.1,
INSD:EG428040.1,INSD:DR303752.1,INSD:EL277985.1,
INSD:DR234458.1,INSD:AU239360.1,INSD:EL062113.1,
INSD:ES133686.1,INSD:ES065624.1,INSD:ES139339.1,
INSD:ES175075.1,INSD:DR303756.1,INSD:AU230657.1,
INSD:DR303755.1,INSD:EL193361.1,INSD:Z35050.1,
INSD:EH835137.1,INSD:EL279196.1,INSD:BP660613.1,
INSD:EL081124.1,INSD:EH981702.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT012125.1,INSD:BT011816.1,INSD:BT012200.1,
INSD:BX828938.1,INSD:AK229649.1,INSD:BX841751.1"
/note="RNA binding; FUNCTIONS IN: RNA binding; INVOLVED
IN: ribosome assembly, ribosome biogenesis; LOCATED IN:
nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Pseudouridine synthase/archaeosine transglycosylase-like
(InterPro:IPR015947), Ribosome biogenesis factor NIP7-like
(InterPro:IPR005155), Pseudouridine synthase/archaeosine
transglycosylase (InterPro:IPR002478), Ribosome biogenesis
factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to
438 proteins in 213 species: Archae - 5; Bacteria - 0;
Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0;
Other Eukaryotes - 101 (source: NCBI BLink)."
/db_xref="TAIR:AT4G15770"
/db_xref="Araport:AT4G15770"
BEGIN
1 MRPLDETETT VVFEKLFKFV GNNLKKIVEN PSDEGPESTP GSYCFRLQKN RVYYVSEALV
61 KRATNISRKN LVSFGTCIGK YTHAGSFHLT IMSLNILAAN AKHKVWLKPT SEMSFLYGNH
121 VLKGGLGRIT DSIVPGDGVV VFSMSDVPLG FGIAAKSTQD CRKLDPNGIV VLHQADIGEY
181 LRGEDDL
//