LOCUS AEE83534.1 787 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Topoisomerase II-associated protein
PAT1 protein.
ACCESSION CP002687-2389
PROTEIN_ID AEE83534.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G14990"
/gene_synonym="DL3535C"
/gene_synonym="FCAALL.26"
/inference="Similar to RNA sequence,
EST:INSD:AV442656.1,INSD:EL065449.1,INSD:AV810162.1,
INSD:BP828397.1,INSD:ES176241.1,INSD:EL117126.1,
INSD:AV798216.1,INSD:DR209256.1,INSD:EL254372.1,
INSD:BP621310.1,INSD:EL030422.1,INSD:N96502.1,
INSD:CA781244.1,INSD:BP659726.1,INSD:EH893749.1,
INSD:AV548127.1,INSD:EL244020.1,INSD:T76011.1,
INSD:EL176472.1,INSD:DR374462.1,INSD:BP837319.1,
INSD:ES142924.1,INSD:EH871340.1,INSD:BP600388.1,
INSD:ES156163.1,INSD:AV827434.1,INSD:AV441251.1,
INSD:EH923118.1,INSD:EL056604.1,INSD:DR209258.1,
INSD:AV788907.1,INSD:BP580300.1,INSD:DR209257.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY086904.1,INSD:AK230115.1,INSD:AY035039.1"
/note="Topoisomerase II-associated protein PAT1; BEST
Arabidopsis thaliana protein match is: Topoisomerase
II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G14990"
/db_xref="Araport:AT4G14990"
intron_pos 18:1 (1/4)
intron_pos 67:0 (2/4)
intron_pos 86:0 (3/4)
intron_pos 111:1 (4/4)
BEGIN
1 MERSDSRDFY NFAKTSSDNN SALFDASQYE FFGQSLEEVE LGGLDDDGTV RGHVDDEEYH
61 LFDKREGAGL GSLSDMDDLA TTFAKLNRNV TGPKHLGVIG DRGSGSFSRE SSTATDWTQD
121 NEFTSWLDQH TVEEQVQEAS WSSQPQSSPN SNSLYRTSSY PQQQTQLQHY SSEPIIVPES
181 TFTSFPSPGK RSQQSSPSHI HRAPSLPGGS QSNFSAPNAS PLSNSTFHLS GLSHGPSHYG
241 NNLARYASCG PTLGNMVQQP PHWVTDPGLL HGDHSALLHS LMQQQHLQQL PPRNGFTSQQ
301 LISLQQRQSL AHLAALQSQL YSSYPSPSHK ALFGVGEVRE HKHKSSHRSR KNRGGISQQT
361 SDLASQKSES GLQFRSKYMT SEEIESILKM QHSNSHSSDP YVNDYYHQAR LAKKSSGSRT
421 KPQLYPSHLK DHQSRSRNSS DQQPQVHVDA LGKITLPSIC RPRALLEVDS PPSSGHKHLE
481 DEPLVAARVT IEDAFGVLID IVDIDRTLQF NRPQDGGAQL RRKRQILLEG LATSLQLVDP
541 FSKTGQKTGL TTKDDIVFLR ITTLPKGRKL LTKYLQLLVP GTEIARVVCM AVFRHLRFLF
601 GGLPSDSLAA ETIANLAKAV TVCVQAMDLR ALSACLAAVV CSSEQPPLRP IGSSSGDGAS
661 VVLVSLLERA AEVIVAVVPP RVSNHGNPND GLWRASFDEF FSLLTKYCRS KYETIHGQNH
721 DNAADVLELA IKREMPAELL RASLRHTNED QRNFLLNVGR SASPVSESTT TRASASGGQI
781 NSEFVRG
//