LOCUS AEE83174.1 630 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana HhH-GPD base excision DNA repair
family protein protein.
ACCESSION CP002687-1864
PROTEIN_ID AEE83174.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G12740"
/gene_synonym="T20K18.90"
/gene_synonym="T20K18_90"
/note="HhH-GPD base excision DNA repair family protein;
FUNCTIONS IN: hydrolase activity, catalytic activity;
INVOLVED IN: DNA repair, base-excision repair; EXPRESSED
IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F
mature embryo stage, petal differentiation and expansion
stage, E expanded cotyledon stage, D bilateral stage;
CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like
(InterPro:IPR015797), DNA glycosylase
(InterPro:IPR011257), NUDIX hydrolase domain
(InterPro:IPR000086), HhH-GPD domain (InterPro:IPR003265);
Has 55833 Blast hits to 29061 proteins in 2861 species:
Archae - 372; Bacteria - 10631; Metazoa - 17750; Fungi -
4523; Plants - 1695; Viruses - 834; Other Eukaryotes -
20028 (source: NCBI BLink)."
/db_xref="TAIR:AT4G12740"
/db_xref="Araport:AT4G12740"
intron_pos 203:0 (1/7)
intron_pos 216:2 (2/7)
intron_pos 222:0 (3/7)
intron_pos 242:0 (4/7)
intron_pos 282:0 (5/7)
intron_pos 314:2 (6/7)
intron_pos 493:1 (7/7)
BEGIN
1 MACLLRVALN PTFERSTVAS QRQNPKTILS FHCKVSSFKT KTMSQSFAPR EKLMRKCREK
61 KEAEREAERE AEREAEEEEK AEEAEAEADK EEAEEESEEE EEEEEEEAEA EEEALGGDIE
121 DLFSENETQK IRMGLLDWYD VNKRDLPWRN RRSESEKERR AYEVWVSEIM LQQTRVQTVM
181 KYYKRWMQKW PTIYDLGQAS LENLIVSRSR ELSFLRGNEK KEVNEMWAGL GYYRRARFLL
241 EGAKMVVAGT EGFPNQASSL MKVKGIGQYT AGAIASIAFN EAVPVVDGNV IRVLARLKAI
301 SANPKDRLTA RNFWKLAAQL VDPSRPGDFN QSLMELGATL CTVSKPSCSS CPVSSQCRAF
361 SLSEENRTIS VTDYPTKVIK AKPRHDFCCV CVLEIHNLER NQSGGRFVLV KRPEQGLLAG
421 LWEFPSVILN EEADSATRRN AINVYLKEAF RFHVELKKAC TIVSREELGE FVHIFTHIRR
481 KVYVELLVVQ LTGGTEDLFK GQAKDTLTWK CVSSDVLSTL GLTSAVRKVP PFRLQHIKRL
541 SLDVMVEKEQ ILECRCIQWL KHTSKAYLFL MSHQIEQPYR GNENSHDLLL TLFFMLLSFY
601 SSCLALGIKF GDLGLKLNSL VSTEKSDGDV
//