LOCUS AEE83159.1 823 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA recognition motif (RRM)-containing
protein protein.
ACCESSION CP002687-1842
PROTEIN_ID AEE83159.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G12640"
/gene_synonym="T1P17.230"
/gene_synonym="T1P17_230"
/inference="Similar to RNA sequence,
EST:INSD:EH862467.1,INSD:AV561165.1,INSD:EH840297.1,
INSD:ES049570.1,INSD:AV523588.1,INSD:AV548017.1,
INSD:EG485834.1,INSD:CB264650.1,INSD:BP826478.1,
INSD:BP604940.1,INSD:AU228729.1,INSD:ES003840.1,
INSD:EH853608.1,INSD:DR253563.1,INSD:BP609051.1,
INSD:AV528737.1,INSD:EL226173.1,INSD:ES012362.1,
INSD:N96947.1,INSD:AU237648.1,INSD:DR368702.1,
INSD:EG485835.1,INSD:EH815315.1,INSD:BP833334.1,
INSD:AV529289.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK229760.1,INSD:AK229154.1,INSD:BX842306.1"
/note="RNA recognition motif (RRM)-containing protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue
SPOC, C-terminal (InterPro:IPR012921), RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA binding (TAIR:AT2G43410.4);
Has 8554 Blast hits to 7148 proteins in 405 species:
Archae - 8; Bacteria - 199; Metazoa - 4614; Fungi - 1472;
Plants - 1436; Viruses - 0; Other Eukaryotes - 825
(source: NCBI BLink)."
/db_xref="TAIR:AT4G12640"
/db_xref="Araport:AT4G12640"
intron_pos 2:0 (1/3)
intron_pos 96:0 (2/3)
intron_pos 498:2 (3/3)
BEGIN
1 MSSRGRERMM MKEDGRGRNP PSRHLWVGNL PHGILERELA DRFLRFGELE SLAFQPGRSY
61 AFVNFNHDED AFAAIESLQG FPLSGNPLRI EFAKAEKSST GSRTDDIYRH DEQRSAARGS
121 SFVQRDSRMR YESPDTYSKS KMNDRNAEPS EVLYIGFPAS LKVDDALLRN VFSSFGEITK
181 VTVFPGRSYA FVQFRNLMAA CKAKESLQGK LFGNPRVHIC FAKSEPSSSG SGRGPSGRSL
241 SPPYRSVDRL GSSEGYLQDR NYGSISRIPS VREPHYIEDR DLEDSEGYIF NRKRDSSSDG
301 GPAYGRSRST HRFPQDMHEY HGSPGEMGTS FRDNPHRFQT RSSEYEEPWD LPEDDYYYQE
361 IKRLKTRSSQ PERQLPGHQL SGIEQERRPF SRASADFSPK DAFERNYEAG QLRYNQTVEQ
421 PLNLAIRNGD KSSLREPHEE LMGGYPLPSV VPERKRYTPE LNRPSLKDWN WEGTIAKGGN
481 PICRAKCFPV GKVMDMMLPE FLDCTARTGL DMLAKHYYQS SKAWVVFFVP GSDADIVFYD
541 EFMHYLEEKQ RAAVSKLDDT TTLFLVPPSD FSEKVLKVPG KLSISGVILR LECGGSGSGG
601 PVQQQGERKD TDLLTYYGET SYSEASGAFP DVGNPRIPGP TAFLRSAGRD NQSASMDPYV
661 EDKHDQLSHR YSGSDWPPRD TNPRSSPFID HTVQKHSGFV PGKQQNADLS RYHDTETPVP
721 AGFQPEQLTH LASSLPRQQQ QVQNTPNQPE RYAPEGRASF SHLQHAQTPS IPQLVTPQNQ
781 NVQIQSSNSQ QQEETEANPQ KRLQATLQLA AALLQQIQQA KPS
//