LOCUS AEE83156.2 649 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transcription initiation factor IIF
subunit alpha RAP74 protein.
ACCESSION CP002687-1838
PROTEIN_ID AEE83156.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="RAP74"
/locus_tag="AT4G12610"
/gene_synonym="ATRAP74"
/gene_synonym="T1P17.200"
/gene_synonym="T1P17_200"
/inference="Similar to RNA sequence,
EST:INSD:ES177518.1,INSD:EH893109.1,INSD:EG428839.1,
INSD:ES150814.1,INSD:EL011430.1,INSD:ES182108.1,
INSD:ES193408.1,INSD:EL143357.1,INSD:ES122734.1,
INSD:ES190516.1,INSD:ES077935.1,INSD:DR269200.1,
INSD:EL283862.1,INSD:EG511766.1,INSD:EG428838.1,
INSD:EL197416.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY463611.1"
/note="RAP74; FUNCTIONS IN: RNA polymerase II
transcription factor activity, transcription initiation
factor activity, DNA binding, transcription activator
activity, catalytic activity; INVOLVED IN: transcription
initiation from RNA polymerase II promoter, positive
regulation of transcription; LOCATED IN: nucleus;
EXPRESSED IN: shoot, root, guard cell; CONTAINS InterPro
DOMAIN/s: Transcription initiation factor IIF, alpha
subunit (InterPro:IPR008851), Transcription Factor IIF,
Rap30/Rap74, interaction (InterPro:IPR011039); Has 34394
Blast hits to 22751 proteins in 1168 species: Archae -
120; Bacteria - 4390; Metazoa - 12539; Fungi - 6082;
Plants - 2082; Viruses - 445; Other Eukaryotes - 8736
(source: NCBI BLink)."
/db_xref="TAIR:AT4G12610"
/db_xref="Araport:AT4G12610"
intron_pos 58:0 (1/9)
intron_pos 109:0 (2/9)
intron_pos 157:2 (3/9)
intron_pos 284:1 (4/9)
intron_pos 324:0 (5/9)
intron_pos 368:0 (6/9)
intron_pos 439:0 (7/9)
intron_pos 514:0 (8/9)
intron_pos 543:2 (9/9)
BEGIN
1 MSNCLQLNTS CVGCGSQSDL YGSSCRHMTL CLKCGRTMAQ NKSKCHECGT VVTRLIREYN
61 VRAAAPTDKN YFIGRFVTGL PNFKKGSENK WSLRKDIPQG RQFTDAQREK LKNKPWILED
121 ETGQFQYQGH LEGSQSATYY LLVMQNKEFV AIPAGSWYNF NKVAQYKQLT LEEAEEKMKN
181 RRKTADGYQR WMMKAANNGP ALFGEVDNEK ESGGTSGGGG RGRKKSSGGD EEEGNVSDRG
241 DEDEEEEASR KSRLGLNRKS NDDDDEEGPR GGDLDMDDDD IEKGDDWEHE EIFTDDDEAV
301 GNDPEEREDL LAPEIPAPPE IKQDEDDEEN EEEEGGLSKS GKELKKLLGK ANGLDESDED
361 DDDDSDDEEE TNYGTVTNSK QKEAAKEEPV DNAPAKPAPS GPPRGTPPAK PSKGKRKLND
421 GDSKKPSSSV QKKVKTENDP KSSLKEERAN TVSKSNTPTK AVKAEPASAP ASSSSAATGP
481 VTEDEIRAVL MEKKQVTTQD LVSRFKARLK TKEDKNAFAN ILRKISKIQK NAGSQNFVVL
541 REKCQPKPGK RESRVNKLNI RSNLQPRKME LVTEDEIRKV LMEKKQLTTL ELVMRFKERL
601 TTTEDKDSFS HILKKIAKLQ KNPGSEKFVV VLRDNVTPLA SDLTRLSIS
//