LOCUS AEE82715.1 304 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002687-1235
PROTEIN_ID AEE82715.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G09040"
/gene_synonym="F23J3.70"
/gene_synonym="F23J3_70"
/inference="Similar to RNA sequence,
EST:INSD:EH796127.1,INSD:DR278701.1,INSD:ES150307.1,
INSD:EL263641.1,INSD:AV558443.1,INSD:BP803285.1,
INSD:EH901091.1,INSD:BP861268.1,INSD:EL307915.1,
INSD:DR278714.1,INSD:N97312.1,INSD:DR278700.1,
INSD:DR278708.1,INSD:DR297582.1,INSD:ES013009.1,
INSD:DR278702.1,INSD:DR278695.1,INSD:DR380451.1,
INSD:EL103075.1,INSD:EH821785.1,INSD:BP834681.1,
INSD:EL203353.1,INSD:DR278711.1,INSD:AV558108.1,
INSD:EL312517.1,INSD:EL021622.1,INSD:ES191221.1,
INSD:BP781533.1,INSD:BP843090.1,INSD:EL088233.1,
INSD:ES116028.1,INSD:EH907599.1,INSD:EL202336.1,
INSD:BP631142.1,INSD:BP653125.1,INSD:EH935449.1,
INSD:EH909491.1,INSD:EH944368.1,INSD:EL328315.1,
INSD:EL143507.1,INSD:BP835700.1,INSD:DR379091.1,
INSD:BP616434.1,INSD:CF773369.1,INSD:EL164546.1,
INSD:AV821738.1,INSD:DR278716.1,INSD:EH814407.1,
INSD:DR278710.1,INSD:EH896733.1,INSD:DR278685.1,
INSD:EL258051.1,INSD:DR278698.1,INSD:EG477409.1,
INSD:DR278697.1,INSD:DR278689.1,INSD:ES076247.1,
INSD:EH930786.1,INSD:EH819146.1,INSD:BP641956.1,
INSD:DR278709.1,INSD:DR278693.1,INSD:BP822105.1,
INSD:DR278707.1,INSD:BP842089.1,INSD:EH795649.1,
INSD:EH842193.1,INSD:DR278713.1,INSD:EL032332.1,
INSD:EH990662.1,INSD:EH949456.1,INSD:EL215048.1,
INSD:BP847440.1,INSD:DR297583.1,INSD:BP839368.1,
INSD:DR278712.1,INSD:DR278686.1,INSD:DR278687.1,
INSD:EL334020.1,INSD:DR278699.1,INSD:EH939450.1,
INSD:DR278715.1,INSD:EH860887.1,INSD:DR278690.1,
INSD:EG498506.1,INSD:DR278688.1,INSD:EH886130.1,
INSD:AV441415.1,INSD:EL205869.1,INSD:DR278704.1,
INSD:BP836529.1,INSD:DR278694.1,INSD:DR278706.1,
INSD:DR278691.1,INSD:EL044001.1,INSD:EH928262.1,
INSD:DR278705.1,INSD:EL053208.1,INSD:EH876787.1,
INSD:EH900449.1,INSD:EL103283.1,INSD:EH806718.1,
INSD:DR278703.1,INSD:DR278696.1,INSD:DR278692.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX842345.1,INSD:AK176316.1,INSD:BX842352.1,
INSD:AK175121.1,INSD:BT010910.1,INSD:AK175630.1,
INSD:AK220985.1,INSD:AK175672.1,INSD:AK175147.1,
INSD:AY088949.1,INSD:AK175723.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
leaf; CONTAINS InterPro DOMAIN/s: RNA recognition motif,
RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta
plait (InterPro:IPR012677); BEST Arabidopsis thaliana
protein match is: RNA-binding (RRM/RBD/RNP motifs) family
protein (TAIR:AT2G35410.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G09040"
/db_xref="Araport:AT4G09040"
intron_pos 125:0 (1/3)
intron_pos 158:0 (2/3)
intron_pos 255:0 (3/3)
BEGIN
1 MALLRLPGIS LQILGHKSNQ KNPNPNVAFT NHSLSLSTPS LCRLHRHATF PDSIPAKSRN
61 LTSYFSTTTQ EPVLESSSSS SSAPEVVEEE ISKTRLIAQN VPWTSTPEDI RSLFEKYGSV
121 IDIEMSMHKK ERNRGLVFIE MASPEEAATA LKSLESCEYE GRRLKVDYAK TKKKKTYAPR
181 ETPSPVPTFN LFVANLAFEA RAKHLKEFFD ADTGNVVSTE VIFHENPRRS SGYGFVSFKT
241 KKQAEAALIE FQGKDFLGRP IRLAKSKQFV KLQAKEGLQP PEEEAEEEPS QSETMTQEHE
301 TPAA
//