LOCUS AEE82438.1 743 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana protodermal factor 2 protein.
ACCESSION CP002687-890
PROTEIN_ID AEE82438.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="PDF2"
/locus_tag="AT4G04890"
/gene_synonym="protodermal factor 2"
/gene_synonym="T1J1.3"
/gene_synonym="T1J1_3"
/inference="Similar to RNA sequence,
EST:INSD:EL090176.1,INSD:ES123542.1,INSD:EH877733.1,
INSD:BG459289.1,INSD:EH945110.1,INSD:EL325498.1,
INSD:ES090988.1,INSD:EL243447.1,INSD:ES123094.1,
INSD:EH825084.1,INSD:BP848584.1,INSD:BP612152.1,
INSD:DR374176.1,INSD:EH977844.1,INSD:EL016373.1,
INSD:ES076913.1,INSD:ES156800.1,INSD:EL336887.1,
INSD:ES001303.1,INSD:DR243881.1,INSD:EL173235.1,
INSD:EH968817.1,INSD:BP651417.1,INSD:BU635155.1,
INSD:EG505901.1,INSD:ES149958.1,INSD:AV529713.1,
INSD:DR318325.1,INSD:ES009085.1,INSD:AV523940.1,
INSD:AV801262.1,INSD:ES054711.1,INSD:DR356174.1,
INSD:ES206905.1,INSD:ES123533.1,INSD:EL995770.1,
INSD:ES202954.1,INSD:EL100146.1,INSD:DR377916.1,
INSD:AV824602.1,INSD:ES193530.1,INSD:EL991754.1,
INSD:BP638783.1,INSD:ES086171.1,INSD:EL212296.1,
INSD:ES027347.1,INSD:BE527415.1,INSD:ES157591.1,
INSD:DR318326.1,INSD:EL021103.1,INSD:ES086850.1,
INSD:DR373062.1,INSD:EL032304.1,INSD:DR243880.1,
INSD:EL276165.1,INSD:EH920193.1,INSD:AV796031.1,
INSD:ES039533.1,INSD:EL157275.1,INSD:ES021481.1,
INSD:ES072374.1,INSD:ES032933.1,INSD:EL085131.1,
INSD:EH898334.1,INSD:ES173540.1,INSD:AV786902.1,
INSD:EH921875.1,INSD:DR378193.1,INSD:AV528997.1,
INSD:DR243879.1,INSD:ES168295.1,INSD:ES171810.1,
INSD:ES106094.1,INSD:ES019996.1,INSD:ES077179.1,
INSD:EG505900.1,INSD:ES069168.1,INSD:BP660766.1,
INSD:EL989800.1,INSD:DR361980.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY062575.1,INSD:BT000144.1,INSD:AF424560.1"
/note="protodermal factor 2 (PDF2); FUNCTIONS IN: DNA
binding, sequence-specific DNA binding transcription
factor activity; INVOLVED IN: epidermal cell
differentiation, regulation of transcription,
DNA-dependent, cotyledon development; LOCATED IN: nucleus;
EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Homeobox,
conserved site (InterPro:IPR017970), Homeobox
(InterPro:IPR001356), Homeodomain-like
(InterPro:IPR009057), Lipid-binding START
(InterPro:IPR002913), Homeodomain-related
(InterPro:IPR012287); BEST Arabidopsis thaliana protein
match is: Homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein
(TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT4G04890"
/db_xref="Araport:AT4G04890"
intron_pos 79:2 (1/9)
intron_pos 119:0 (2/9)
intron_pos 182:0 (3/9)
intron_pos 329:0 (4/9)
intron_pos 363:0 (5/9)
intron_pos 431:0 (6/9)
intron_pos 488:1 (7/9)
intron_pos 579:0 (8/9)
intron_pos 611:0 (9/9)
BEGIN
1 MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPSQRP
61 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN LEPLQVKFWF QNKRTQMKAQ
121 SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE
181 EIDRISAIAA KYVGKPLGSS FAPLAIHAPS RSLDLEVGNF GNQTGFVGEM YGTGDILRSV
241 SIPSETDKPI IVELAVAAME ELVRMAQTGD PLWLSTDNSV EILNEEEYFR TFPRGIGPKP
301 LGLRSEASRQ SAVVIMNHIN LVEILMDVNQ WSCVFSGIVS RALTLEVLST GVAGNYNGAL
361 QVMTAEFQVP SPLVPTRENY FVRYCKQHSD GSWAVVDVSL DSLRPSTPIL RTRRRPSGCL
421 IQELPNGYSK VTWIEHMEVD DRSVHNMYKP LVQSGLAFGA KRWVATLERQ CERLASSMAS
481 NIPGDLSVIT SPEGRKSMLK LAERMVMSFC SGVGASTAHA WTTMSTTGSD DVRVMTRKSM
541 DDPGRPPGIV LSAATSFWIP VAPKRVFDFL RDENSRKEWD ILSNGGMVQE MAHIANGHEP
601 GNCVSLLRVN SGNSSQSNML ILQESCTDAS GSYVIYAPVD IVAMNVVLSG GDPDYVALLP
661 SGFAILPDGS VGGGDGNQHQ EMVSTTSSGS CGGSLLTVAF QILVDSVPTA KLSLGSVATV
721 NSLIKCTVER IKAAVSCDVG GGA
//