LOCUS AEE82272.1 441 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein-defense related 1 protein.
ACCESSION CP002687-638
PROTEIN_ID AEE82272.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="RBP-DR1"
/locus_tag="AT4G03110"
/gene_synonym="AtBRN1"
/gene_synonym="AtRBP-DR1"
/gene_synonym="BRN1"
/gene_synonym="Bruno-like 1"
/gene_synonym="F4C21.3"
/gene_synonym="RNA-binding protein-defense related 1"
/inference="Similar to RNA sequence,
EST:INSD:EH933975.1,INSD:EL197954.1,INSD:EH845959.1,
INSD:EL020171.1,INSD:EL108958.1,INSD:EH894538.1,
INSD:BP671890.1,INSD:EL304160.1,INSD:EL216775.1,
INSD:BP823566.1,INSD:ES015150.1,INSD:EL112582.1,
INSD:EH843434.1,INSD:DR379774.1,INSD:BP581299.1,
INSD:EL269201.1,INSD:EL252032.1,INSD:EL302001.1,
INSD:EH958008.1,INSD:EL338911.1,INSD:EL121081.1,
INSD:EL174303.1,INSD:BP662713.1,INSD:EH984578.1,
INSD:EL224411.1,INSD:EL136483.1,INSD:EL217061.1,
INSD:EL083495.1,INSD:EL221589.1,INSD:EH801777.1,
INSD:BP668382.1,INSD:EL252694.1,INSD:EL330500.1,
INSD:CK117649.1,INSD:EH902069.1,INSD:EL149472.1,
INSD:EH878356.1,INSD:EL063164.1,INSD:EL113455.1,
INSD:EL221607.1,INSD:EH978006.1,INSD:EH869776.1,
INSD:EH865820.1,INSD:EH886332.1,INSD:EL164684.1,
INSD:EH907206.1,INSD:EL240442.1,INSD:AV803654.1,
INSD:EL243744.1,INSD:DR285815.1,INSD:EL007155.1,
INSD:EL178366.1,INSD:BP814783.1,INSD:EL261072.1,
INSD:BP862681.1,INSD:N38571.1,INSD:AV828970.1,
INSD:ES158561.1,INSD:EL118392.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY084669.1"
/note="RNA-binding protein-defense related 1 (RBP-DR1);
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: plant-type hypersensitive
response, positive regulation of salicylic acid mediated
signaling pathway; LOCATED IN: cytoplasm; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 15 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Ribonucleoprotein, BRUNO-like
(InterPro:IPR015903), Paraneoplastic encephalomyelitis
antigen (InterPro:IPR002343), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: RNA-binding (RRM/RBD/RNP
motifs) family protein (TAIR:AT1G03457.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink)."
/db_xref="TAIR:AT4G03110"
/db_xref="Araport:AT4G03110"
intron_pos 60:1 (1/8)
intron_pos 88:0 (2/8)
intron_pos 105:1 (3/8)
intron_pos 147:1 (4/8)
intron_pos 174:0 (5/8)
intron_pos 234:0 (6/8)
intron_pos 345:1 (7/8)
intron_pos 393:1 (8/8)
BEGIN
1 MAEAKEENRE KNEEEESVKL FVGQIPKHMS ESQLLTLFQE FAVVDEVNII KDKITRASRG
61 CCFLLCPSRE EADKLVNACH NKKTLPGANS LLQVKYADGE LERLEHKLFV GMLPKNVSEA
121 EVQSLFSKYG TIKDLQILRG AQQTSKGCAF LKYETKEQAV SAMESINGKH KMEGSTVPLV
181 VKWADTERER HTRRLQKAQS HIARLGNGDP TNPSLFGALP MGYVPPYNGY GYHQPPGTYG
241 YMLPPIQNQA AFSNMIAQPN QGNNNALQGT SPDSVPPRLA RRNFPMPPGN YMGSGYPAMR
301 GHPFPFAYPR GIVSPRPLSS SPGSISPGMS TPLGIGLSSV VQTEGPEGAN LFIYNIPREF
361 GDQELAAAFQ SFGIVLSAKV FVDKATGVSK CFGFVSYDSQ AAAQNAIDMM NGRHLGGKKL
421 KVQLKRDSNN GQPSSNPSLI S
//