LOCUS AEE82236.1 116 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002687-592
PROTEIN_ID AEE82236.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G02840"
/gene_synonym="T5J8.16"
/gene_synonym="T5J8_16"
/inference="Similar to RNA sequence,
EST:INSD:DR207203.1,INSD:ES005818.1,INSD:ES063004.1,
INSD:AV556930.1,INSD:DR207207.1,INSD:ES196417.1,
INSD:AU238514.1,INSD:ES204066.1,INSD:DR207208.1,
INSD:ES052565.1,INSD:EL019858.1,INSD:BP817503.1,
INSD:ES161662.1,INSD:EG461062.1,INSD:ES176654.1,
INSD:DR207210.1,INSD:EH808213.1,INSD:ES180726.1,
INSD:DR207211.1,INSD:Z47575.1,INSD:DR207205.1,
INSD:AV531570.1,INSD:ES136888.1,INSD:ES072763.1,
INSD:EH954322.1,INSD:DR371818.1,INSD:AV556591.1,
INSD:BP576427.1,INSD:T46269.1,INSD:EL199163.1,
INSD:BP823720.2,INSD:AU229706.1,INSD:ES066371.1,
INSD:DR379709.1,INSD:DR207202.1,INSD:AI993995.1,
INSD:EG461061.1,INSD:DR207209.1,INSD:DR207206.1,
INSD:DR207204.1,INSD:AA404780.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK117672.1,INSD:BX829208.1,INSD:AY084707.1,
INSD:BX829270.1"
/note="Small nuclear ribonucleoprotein family protein;
FUNCTIONS IN: molecular_function unknown; LOCATED IN:
nucleolus, nucleus, small nucleolar ribonucleoprotein
complex, plasma membrane, membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain
(InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)
domain, eukaryotic/archaea-type (InterPro:IPR006649),
Like-Sm ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: Small nuclear ribonucleoprotein family protein
(TAIR:AT3G07590.2); Has 1198 Blast hits to 1197 proteins
in 227 species: Archae - 0; Bacteria - 0; Metazoa - 457;
Fungi - 332; Plants - 215; Viruses - 0; Other Eukaryotes -
194 (source: NCBI BLink)."
/db_xref="TAIR:AT4G02840"
/db_xref="Araport:AT4G02840"
intron_pos 5:2 (1/3)
intron_pos 31:1 (2/3)
intron_pos 95:1 (3/3)
BEGIN
1 MKLVRFLMKL NNETVSIELK NGTIVHGTIT GVDVSMNTHL KAVKLTLKGK NPVTLDHLSV
61 RGNNIRYYIL PDSLNLETLL VEDTPRIKPK KPTAGKIPAG RGRGRGRGRG RGRGGR
//