LOCUS AEE81967.1 1787 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana helicase domain-containing protein
/ IBR domain-containing protein / zinc finger protein-
like protein protein.
ACCESSION CP002687-220
PROTEIN_ID AEE81967.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /locus_tag="AT4G01020"
/gene_synonym="F3I3.40"
/gene_synonym="F3I3_40"
/inference="Similar to RNA sequence,
EST:INSD:EL294279.1,INSD:EL990340.1,INSD:EL235643.1,
INSD:ES105661.1,INSD:EL119740.1,INSD:AI996904.1"
/note="helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related;
FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular,
chloroplast; CONTAINS InterPro DOMAIN/s:
Helicase-associated domain (InterPro:IPR007502), Zinc
finger, C2H2-like (InterPro:IPR015880), Zinc finger,
RING-type, conserved site (InterPro:IPR017907), DNA/RNA
helicase, DEAD/DEAH box type, N-terminal
(InterPro:IPR011545), Domain of unknown function DUF1605
(InterPro:IPR011709), Zinc finger, C6HC-type
(InterPro:IPR002867), Zinc finger, RING-type
(InterPro:IPR001841), K Homology (InterPro:IPR004087),
DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved
site (InterPro:IPR002464), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Zinc finger, C2H2-type
(InterPro:IPR007087), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: helicase domain-containing
protein / IBR domain-containing protein / zinc finger
protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits
to 12409 proteins in 1676 species: Archae - 4; Bacteria -
3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses
- 760; Other Eukaryotes - 2113 (source: NCBI BLink)."
/db_xref="TAIR:AT4G01020"
/db_xref="Araport:AT4G01020"
intron_pos 321:0 (1/3)
intron_pos 776:0 (2/3)
intron_pos 1366:1 (3/3)
BEGIN
1 MRNSFPPSDG GRSTTDRRQQ SFPSSSTNRY NSRSAQSSPP LNHCTTWNQQ HSQYHNTNFP
61 PNYRRDRAPS SGFSPPVTRA RPNFIVQLLH PAAANSDTKL SKKQEIESIA LLCEIPEESV
121 HVPQFGCIAA SFSFRQWVDA RSAVVALWDY RLQGRHDFVP ELIPNVVVPS DMDELKDRLR
181 DLFSSHVLSL MENGQGVKKV RMEIDDKSRQ VASFSSKRGL KFEVFEKKKA LEAERDLVVN
241 RLDEFNNAMK SILRYLIGQD GYEFDVDDED DEDVAVFSLE GAYDWRRIHY LILRECRRLE
301 DGLPIYAYRR QILKKIHCEQ IMVLIGETGS GKSTQLVQFL ADSGVAASES IVCTQPRKIA
361 AMTLTDRVRE ESSGCYEENT VSCTPTFSST EEISSKVVYM TDNCLLQHYM KDRSLSGISC
421 VIIDEAHERS LNTDLLLALL RKLLSRRIDL RLVIMSATAD ANQLSQYLFD CGILHVNGRN
481 FPVEIVYSPS GTEENSVVGR IASYAGDVVK MAVEIHKTEK EGTILAFLTS QAEVEWACER
541 FVAPSAIALP LHGKLSFEEQ FMVFQNYPGR RKVIFATNIA ETSLTIPGVK YVIDSGMVKE
601 SKYEPRTGMS ILKVCQVSQS SARQRAGRAG RTEPGRCYRL YSKTDFDSMN LNQEPEIRRV
661 HLGVALLRML ALGIDNIAAF EFVDAPVPEA IAMAIQNLVQ LGAVVEKNGV LELTQEGHCL
721 VKLGLEPKLG KLILGCFRHR MGKEGIVLAA VMANASSIFC RVGNFDDKMK ADRLKVQFCN
781 DNGDLFTLLS VYKEWASLPR DRRNKWCWEN SLNAKSMRRC EDTVKELEIC IERELTLVSP
841 SYWVWNPNEG TKHDKYLKMV ILASLAENVA MYTGYDQLGY EVALTSQQVQ LHPSCSLLAF
901 GQKPSWVVFG ELLSIVDQYL VCVTAFDFEA LYMLDPPPPF DASQMDERRL RVKKVVGCSS
961 TVLKRFCGKS NRSLLSIVSR ARSLCSDERI GIQVDVDQNE IRLYASPLDM EKVSALVNDA
1021 LECEKKWMRN ECLEKYLFHG RGQIPIALFG SGAQIKHLEV DQRFLTVDVH YYGDDVVDDR
1081 ELLTFLEKKI DGCICSIYKF AANKQDCDEK EKWGRITFLT PESAMKATEI QKFDFKGSVL
1141 KVFPSLSTGG GIFKMPYFSS VTAKIRWPRK ESSGRGCLKC PSGDIHSILG DITSLEIGTN
1201 YVHIQRDQLS NDSILISGLG DLSEAEVLDV LEFRTQRRDL NFFIFRKKYS VQCPSPTACE
1261 EELHKRIFAR MSAKNPEPNC VQVQVFEPKE DNYFMRALIK FDGRLHLEAA KALQELNGEV
1321 LPGCLPWQKI KCEQLFQSSI ICSASIYNTV KRQLNVLLAR FERQKGGECC LEPTHNGAYR
1381 VKITAYATRP VAEMRRELEE LLRGKPINHP GFTPRVVQHL MSRDGINLMR KIQQETETYI
1441 LLDRHNLTVR ICGTSEKIAK AEQELVQSLM DYHESKQLEI HLRGPEIRPD LMKEVVKRFG
1501 PELQGIKEKV HGVDLKLNTR YHVIQVHGSK EMRQEVQKMV NELAREKSAL GEKPDEIELE
1561 CPICLSEVDD GYSLEGCSHL FCKACLLEQF EASMRNFDAF PILCSHIDCG APIVVADMRA
1621 LLSQEKLDEL ISASLSAFVT SSDGKLRFCS TPDCPSIYRV AGPQESGEPF ICGACHSETC
1681 TRCHLEYHPL ITCERYKKFK ENPDLSLKDW AKGKDVKECP ICKSTIEKTD GCNHLQCRCG
1741 KHICWTCLDV FTQAEPCYAH LRTIHGGIGL VELGVPEHPV AQPVHRL
//