LOCUS AEE81936.1 1913 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana transducin family protein / WD-40
repeat family protein protein.
ACCESSION CP002687-164
PROTEIN_ID AEE81936.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 18585056)
AUTHORS Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
Martienssen,R. and McCombie,W.R.
TITLE Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 769-777 (1999)
PUBMED 10617198
REFERENCE 2 (bases 1 to 18585056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 18585056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="4"
/ecotype="Columbia"
protein /gene="SETH5"
/locus_tag="AT4G00800"
/gene_synonym="A_TM018A10.23"
/gene_synonym="A_TM018A10_23"
/gene_synonym="T18A10.7"
/gene_synonym="T18A10_7"
/inference="Similar to RNA sequence,
EST:INSD:CO048812.1,INSD:BE523901.1,INSD:EH974708.1,
INSD:EL244907.1,INSD:BP837122.1,INSD:CF773016.1,
INSD:EH845711.1,INSD:BP790117.1,INSD:EH967830.1,
INSD:AU237725.1,INSD:ES018281.1,INSD:EL306081.1,
INSD:AU228812.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK229889.1"
/note="transducin family protein / WD-40 repeat family
protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED
IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: 4 anthesis, F mature embryo
stage, petal differentiation and expansion stage, E
expanded cotyledon stage, D bilateral stage; CONTAINS
InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782),
Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat,
conserved site (InterPro:IPR019775), WD40 repeat
(InterPro:IPR001680), WD40 repeat-like-containing domain
(InterPro:IPR011046), WD40-repeat-containing domain
(InterPro:IPR017986), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), Armadillo-type fold
(InterPro:IPR016024); Has 298 Blast hits to 228 proteins
in 78 species: Archae - 0; Bacteria - 17; Metazoa - 93;
Fungi - 89; Plants - 34; Viruses - 0; Other Eukaryotes -
65 (source: NCBI BLink)."
/db_xref="TAIR:AT4G00800"
/db_xref="Araport:AT4G00800"
intron_pos 467:0 (1/17)
intron_pos 570:0 (2/17)
intron_pos 650:0 (3/17)
intron_pos 683:1 (4/17)
intron_pos 736:0 (5/17)
intron_pos 947:1 (6/17)
intron_pos 969:0 (7/17)
intron_pos 1003:0 (8/17)
intron_pos 1050:2 (9/17)
intron_pos 1069:1 (10/17)
intron_pos 1283:0 (11/17)
intron_pos 1346:2 (12/17)
intron_pos 1449:0 (13/17)
intron_pos 1547:0 (14/17)
intron_pos 1583:2 (15/17)
intron_pos 1696:0 (16/17)
intron_pos 1837:0 (17/17)
BEGIN
1 MELDLDSFLV SDSDSDSDLD SSSVPHRTVD EILNASSSSS ASSSPPSSPP SINRRKQDDP
61 NRRLSEALTN VAVLRPESEL HRGFPPTRRN STSSSSLRQL PLPSLLAGVR SNVKPGAALA
121 AAVAASRLVP TPHAAIIKSR RASSASSELL LQVSNQEEDD HEVLSSNGDS VGVAAGSVSA
181 DDFRSFGGES LLEDEDNGVS GVASLEDEAK VMEVQASDIT ESLNPDLVTV SSGFDSEGNV
241 STEKEAETTM EAGNAAIDDD TDETMLVASL VESSESQHLT DSEGKCDDAK VSNDEESSVG
301 DVKSDKSDII IPESKKEGGD AFIPDDGSSM SGISELVEER IAELENERMS KRERLKSQSF
361 RKQLVLAEEF EKKQAYTGLH WEEGAAAQPM RLEGVKIGST NLGYFDVDAD NVISRTISSQ
421 AFKRDHGSPQ VLAVHLNYIA VGTSKGVIVV VPSKYSSDHA DQMESKMIWL GLQGERSQSP
481 VTSVCFNQIG SLLLAGYGDG HVTVWDMQRA SIAKVITEHT APVVYAFFLG RDSQGSRQFK
541 VITSDTKGVV FKHSFSYARL LNMYTVETQC LLDGQKNGTV LSASPLPDEN FGSSLVSSKG
601 GNSAVPSSSI SSMMGGVVGV GSTWKLFNED STSVEEGVVI FATYQTGLVV KLIPNLEVYA
661 QLPRPEGVRE GSMPYTAWRR STENYSKEAE DRVSFLVIAW DRRVQVAKLV KSDIKEYAKW
721 SLDSPAIGVV WLDDQLLVIP TVTGHLYLFT RDGVVIHQTN FSVAGSSGND LISYHTYFTN
781 VFGNPEKAYH NSMGVRGASV YILGTAHLVI SRLLPWKERV DVLRRGGDWM GAFNMAMSLF
841 NGQAHGVVDL PKTVDAIREA IAPSLAELLL SYVDEVFSYI SIAFSNQIEN NGVTHEPSSG
901 INNVNLEIEE QYNRVGGVAV EFCVHINRMD LLFDEIFSRF VAVQQRDTFL ELLEPYILRD
961 MLGSLPPEIM QALVEHYSRK GWLQRIEQCV LHMDISSLDF NQVVRICREH GLYGALLYLF
1021 NKGLDDFRSP LEELLIVLRN SEKQRATAIG YRMLVYLKYC FLGLAFPPGH GTLNPTRWPS
1081 LRSELIQFLL EKSNAHDSST CVTSRLNYLN LYHLLEMDTE ATLDVLRYAF VENEMVKHES
1141 HLLEYGEVSV ESKTDGSLPE VSNDILIQNL VDALVHVPDW GVSNESGDPI DSKSDKNWPS
1201 KEDTSHLFEF VAYYAARGRV SISKSVLAQI LDYLTSDHIL PTYNVSSKMR ENQLLNLLKA
1261 VPETDWDADY VSQLCEKAHF YQVCGYIHII DRRYVAALDS YVKEADEPIH LFCYVNKMLS
1321 QLSGDEFTAF QSAIISRIPE LLDLSRQGAF FLIICNLKDT IKRIQEQLHS HPRSLFLYLK
1381 TVIEVYLSGS LDFSRLRKHE AVDSSGENIR RDIPKEAKIY LEGLNDFPKF IQDNPVNVTD
1441 DMIELYVELL CKYEPKSVLK FLETFDSYRV EHCLRLCQEY GIVDAAAFLL ERVGDAGSAL
1501 SLTLSGLNEK YVELEIAVEC LMSEMKLGAS EGASLEHFSS ALELKEVHDI QGVLQACIGL
1561 CQRNTPRLNP EESEILWFRF LDTFCEPLME SYREPKNTDG INKGSLGVKS LERHVNESDV
1621 AIKWRIPRSD TAATHILRKL ISQFIKEIVE GMIGYVRLPT IMTKLLSDNG TQEFGDFKLT
1681 ILGMLGTYGF ERRILDTAKS LIEDDTFYSM NLLKKGASHG YAPRSLLCCI CSCPLTKTFS
1741 ALRVRVFNCG HATHLQCEPS ENETSTSASS IHVSSSGCPV CMTKKTSKSS LKGKSFYRDY
1801 GLISTVSSNA GSSQRASPYS HENEMSDHSH NQQLSRFEIL TNLQKDQRLV QIESLPRLRL
1861 APPAVYHEKV SRLSGFTPGE SSGKDTKPVK TGQGKKPKTK GSIFGSTFGK SFL
//