LOCUS AEE80419.1 594 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana F-box/RNI-like superfamily protein protein.
ACCESSION CP002686-9365
PROTEIN_ID AEE80419.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TIR1"
/locus_tag="AT3G62980"
/gene_synonym="AtTIR1"
/gene_synonym="TRANSPORT INHIBITOR RESPONSE 1"
/inference="Similar to RNA sequence,
EST:INSD:EL990099.1,INSD:DR247623.1,INSD:BX836765.1,
INSD:BP658758.1,INSD:BX840990.1,INSD:BP830110.1,
INSD:EL028333.1,INSD:DR247604.1,INSD:BP818527.1,
INSD:BP607229.1,INSD:BP657006.1,INSD:BP838125.1,
INSD:DR247594.1,INSD:AV783540.1,INSD:DR247616.1,
INSD:BP779638.1,INSD:CB256710.1,INSD:BX839259.1,
INSD:DR247602.1,INSD:BP841217.1,INSD:N38194.1,
INSD:BP562277.2,INSD:DR247621.1,INSD:BP813788.1,
INSD:BP790636.1,INSD:EL108065.1,INSD:BP830705.1,
INSD:BP614916.1,INSD:F14122.1,INSD:BX839480.1,
INSD:DR247593.1,INSD:DR247606.1,INSD:EH980019.1,
INSD:BP638867.1,INSD:AV554350.1,INSD:EL225797.1,
INSD:DR247610.1,INSD:DR247592.1,INSD:BP585398.1,
INSD:EG422903.1,INSD:BP822223.1,INSD:EG422905.1,
INSD:AV547982.1,INSD:BP790112.1,INSD:BP829324.1,
INSD:BX839175.1,INSD:BP643345.1,INSD:BP793517.1,
INSD:BP612022.1,INSD:EL014963.1,INSD:BP843432.1,
INSD:DR247581.1,INSD:F14012.1,INSD:BP646497.1,
INSD:BP831139.1,INSD:DR247599.1,INSD:DR247582.1,
INSD:BP818571.1,INSD:DR247619.1,INSD:DR247624.1,
INSD:EL187850.1,INSD:BP780736.1,INSD:BP839684.1,
INSD:DR247608.1,INSD:DR247629.1,INSD:BP795660.1,
INSD:DR247620.1,INSD:BX841221.1,INSD:EH799118.1,
INSD:DR247628.1,INSD:BP569518.1,INSD:BP612377.1,
INSD:DR247584.1,INSD:DR247625.1,INSD:EL325933.1,
INSD:EH931918.1,INSD:AV810926.1,INSD:DR247583.1,
INSD:BP817162.1,INSD:BP591325.1,INSD:BP818023.1,
INSD:DR247588.1,INSD:DR247600.1,INSD:EL084735.1,
INSD:BP653058.1,INSD:BP809124.1,INSD:AA067426.1,
INSD:BP781895.1,INSD:BP827529.1,INSD:DR247633.1,
INSD:DR247634.1,INSD:DR247609.1,INSD:EH936943.1,
INSD:BP818311.1,INSD:BP570413.1,INSD:DR247603.1,
INSD:BP808280.1,INSD:BP613893.1,INSD:EG503841.1,
INSD:DR247615.1,INSD:DR247636.1,INSD:EG503842.1,
INSD:CK119539.1,INSD:BP651885.1,INSD:DR247622.1,
INSD:DR247596.1,INSD:DR247597.1,INSD:DR337640.1,
INSD:EL172956.1,INSD:BP560862.2,INSD:DR247618.1,
INSD:BP814451.1,INSD:BP600421.1,INSD:BX836538.1,
INSD:BP621587.1,INSD:DR372492.1,INSD:EL118514.1,
INSD:AV545589.1,INSD:W43722.1,INSD:BX835522.1,
INSD:AV527005.1,INSD:DR247611.1,INSD:DR247591.1,
INSD:DR247598.1,INSD:DR247617.1,INSD:BP862672.1,
INSD:DR247613.1,INSD:EL109763.1,INSD:BP654768.1,
INSD:AV558281.1,INSD:EL025290.1,INSD:DR247590.1,
INSD:DR247586.1,INSD:EL170940.1,INSD:DR247585.1,
INSD:BP656114.1,INSD:AV520615.1,INSD:AV811865.1,
INSD:BP655195.1,INSD:DR247631.1,INSD:BP814719.1,
INSD:BP786779.1,INSD:BX836632.1,INSD:BP799381.1,
INSD:DR374996.1,INSD:DR247627.1,INSD:DR247630.1,
INSD:DR247589.1,INSD:DR337641.1,INSD:DR247635.1,
INSD:DR247595.1,INSD:DR247612.1,INSD:BP588851.1,
INSD:BP811745.1,INSD:DR247601.1,INSD:AV817255.1,
INSD:EH951544.1,INSD:DR247605.1,INSD:DR247614.1,
INSD:DR247632.1,INSD:DR247607.1,INSD:DR247626.1,
INSD:DR247587.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK220790.1,INSD:BT001946.1,INSD:AF327430.1,
INSD:AF005048.1"
/note="TRANSPORT INHIBITOR RESPONSE 1 (TIR1); CONTAINS
InterPro DOMAIN/s: F-box domain, cyclin-like
(InterPro:IPR001810), F-box domain, Skp2-like
(InterPro:IPR022364); BEST Arabidopsis thaliana protein
match is: GRR1-like protein 1 (TAIR:AT4G03190.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink)."
/db_xref="TAIR:AT3G62980"
/db_xref="Araport:AT3G62980"
intron_pos 156:2 (1/2)
intron_pos 321:0 (2/2)
BEGIN
1 MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT
61 VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM SSSYTWLEEI RLKRMVVTDD
121 CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP
181 DTYTSLVSLN ISCLASEVSF SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL
241 GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301 VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT
361 EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT RFRLCIIEPK APDYLTLEPL
421 DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC
481 DSLRKLEIRD CPFGDKALLA NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE
541 RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
//