LOCUS AEE80401.1 108 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002686-9340
PROTEIN_ID AEE80401.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G62840"
/gene_synonym="F26K9.270"
/inference="Similar to RNA sequence,
EST:INSD:ES169702.1,INSD:ES113349.1,INSD:ES140175.1,
INSD:AV820625.1,INSD:BP581041.1,INSD:BP638091.1,
INSD:BP621376.1,INSD:BP869127.1,INSD:BP652560.1,
INSD:CB254025.1,INSD:EL249313.1,INSD:EH854076.1,
INSD:AV566101.1,INSD:BP670363.1,INSD:ES191522.1,
INSD:EG498498.1,INSD:BP789859.1,INSD:ES002518.1,
INSD:BP603843.1,INSD:BP583408.1,INSD:EH941894.1,
INSD:EL306604.1,INSD:AV520322.1,INSD:ES209838.1,
INSD:ES093864.1,INSD:ES197171.1,INSD:EL989385.1,
INSD:EL996861.1,INSD:ES158483.1,INSD:BP650469.1,
INSD:ES041855.1,INSD:EL106331.1,INSD:DR307199.1,
INSD:AV555220.1,INSD:ES188748.1,INSD:AV555999.1,
INSD:ES076718.1,INSD:EL333568.1,INSD:EG440663.1,
INSD:AV797607.1,INSD:ES190488.1,INSD:BP645975.1,
INSD:EL989668.1,INSD:ES172167.1,INSD:BP609944.1,
INSD:BP659231.1,INSD:ES148159.1,INSD:BP582319.1,
INSD:AV789611.1,INSD:CB185735.2,INSD:ES056328.1,
INSD:AV541157.1,INSD:EH825759.1,INSD:AV786532.1,
INSD:EL110682.1,INSD:BP655925.1,INSD:BP573600.1,
INSD:ES161786.1,INSD:AV541133.1,INSD:ES108043.1,
INSD:EH897089.1,INSD:EL113663.1,INSD:BP636278.1,
INSD:AV538824.1,INSD:ES200916.1,INSD:EL316772.1,
INSD:ES040881.1,INSD:AV819279.1,INSD:ES031617.1,
INSD:EL313154.1,INSD:ES158183.1,INSD:EG494711.1,
INSD:BX838479.1,INSD:ES203179.1,INSD:BP636681.1,
INSD:DR307205.1,INSD:AA597983.1,INSD:BP612786.1,
INSD:EL154753.1,INSD:ES200061.1,INSD:DR307209.1,
INSD:ES127311.1,INSD:AV784218.1,INSD:BP646025.1,
INSD:BP570623.1,INSD:ES089312.1,INSD:EL969663.1,
INSD:EL981726.1,INSD:EL341648.1,INSD:ES080583.1,
INSD:ES205795.1,INSD:BP569011.1,INSD:CB264605.1,
INSD:ES090619.1,INSD:EL338353.1,INSD:BP570100.1,
INSD:EG464270.1,INSD:BP788381.1,INSD:BP580364.1,
INSD:DR307202.1,INSD:H36625.1,INSD:AV565791.1,
INSD:AV535104.1,INSD:BP647011.1,INSD:EL187913.1,
INSD:ES178110.1,INSD:BP864529.1,INSD:BP866835.1,
INSD:EL301326.1,INSD:BP669463.1,INSD:DR307198.1,
INSD:BP647617.1,INSD:EH910526.1,INSD:EG464269.1,
INSD:AV541838.1,INSD:ES035353.1,INSD:EL079663.1,
INSD:BP858325.1,INSD:BP657733.1,INSD:EL998864.1,
INSD:ES194623.1,INSD:DR356273.1,INSD:EL036979.1,
INSD:ES067236.1,INSD:BP597520.1,INSD:BP619229.1,
INSD:EH817647.1,INSD:AI999102.1,INSD:EH917102.1,
INSD:ES172752.1,INSD:ES172721.1,INSD:AV559566.1,
INSD:ES125519.1,INSD:BP611118.1,INSD:DR307200.1"
/note="Small nuclear ribonucleoprotein family protein;
CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein
(LSM) domain (InterPro:IPR001163), Like-Sm
ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
(InterPro:IPR006649), Like-Sm ribonucleoprotein
(LSM)-related domain (InterPro:IPR010920); BEST
Arabidopsis thaliana protein match is: Small nuclear
ribonucleoprotein family protein (TAIR:AT2G47640.3); Has
794 Blast hits to 794 proteins in 230 species: Archae - 2;
Bacteria - 0; Metazoa - 329; Fungi - 181; Plants - 143;
Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink)."
/db_xref="TAIR:AT3G62840"
/db_xref="Araport:AT3G62840"
intron_pos 2:2 (1/3)
intron_pos 11:0 (2/3)
intron_pos 71:0 (3/3)
BEGIN
1 MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV
61 LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV IIVLRNPK
//