LOCUS AEE80311.1 471 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002686-9216
PROTEIN_ID AEE80311.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G62110"
/inference="Similar to RNA sequence,
EST:INSD:BX840799.1,INSD:EH804140.1,INSD:EL205896.1,
INSD:AV440206.1,INSD:EH825328.1,INSD:EH867159.1,
INSD:EG511733.1,INSD:DR270219.1,INSD:EL156821.1,
INSD:AV800294.1,INSD:EH809430.1,INSD:EH947462.1,
INSD:EL281561.1,INSD:EG511732.1,INSD:ES045020.1,
INSD:Z26020.1,INSD:EH871457.1,INSD:BP589714.1,
INSD:AI999402.1,INSD:EH864410.1,INSD:EL133717.1,
INSD:EL239291.1,INSD:DR383817.1,INSD:BP591153.1,
INSD:EH805286.1,INSD:EL056160.1,INSD:EH939025.1,
INSD:BP796156.1,INSD:AV559016.1,INSD:BP784864.1,
INSD:EL289890.1,INSD:BP590156.1,INSD:AV805502.1,
INSD:ES145370.1,INSD:ES090065.1,INSD:AV561732.1,
INSD:ES040917.1,INSD:EL095798.1,INSD:Z26021.1,
INSD:EL198372.1,INSD:ES106806.1,INSD:EL334331.1,
INSD:ES188206.1,INSD:EH837832.1,INSD:AV561730.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: response to
cyclopentenone, carbohydrate metabolic process; LOCATED
IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Pectin lyase fold/virulence factor (InterPro:IPR011050),
Glycoside hydrolase, family 28 (InterPro:IPR000743),
Pectin lyase fold (InterPro:IPR012334), Parallel
beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis
thaliana protein match is: Pectin lyase-like superfamily
protein (TAIR:AT4G23500.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G62110"
/db_xref="Araport:AT3G62110"
intron_pos 7:0 (1/5)
intron_pos 113:0 (2/5)
intron_pos 153:1 (3/5)
intron_pos 211:2 (4/5)
intron_pos 235:1 (5/5)
BEGIN
1 MKRSFLLLYV LLVQAFYGAW CSVGESLHCE YSNLASLHRP HSVSITEFGA VGDGVTLNTK
61 AFQNALFYLN SFSDKGGAKL FVPAGQWLTG SFDLISHLTL WLDKGATILG STSSENWPVV
121 DPLPSYGRGR ELPGRRHRSL IYGQNLTDVV ITGENGTIDG QGTVWWDWFR NGELNYTRPH
181 LVELMNSTGL IISNLTFLNS PFWNIHPVYC RDVVVKNLTI LAPLESPNTD GVDPDSSTNV
241 CIEDCYIVTG DDLVSIKSGW DEYGISYARP SSKIKINRLT GQTTSSSGIA IGSEMSGGVS
301 EIYIKDLHLF NSNTGIRIKT SAGRGGYVRN VHILNVKLDN VKKAIRFTGK YGEHPDEKYD
361 PKALPAIEKI TFENVNGDGI GVAGLLEGIE GDVFKNICFL NVTLRVKKNS KKSPWECSNV
421 RGYSQWVSPE ITCDSLKESI FPEHGSDCFG LSENNMEISS GLSRSPWLLS W
//