LOCUS AEE80270.1 264 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-9169
PROTEIN_ID AEE80270.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RS31"
/locus_tag="AT3G61860"
/gene_synonym="arginine/serine-rich splicing factor 31"
/gene_synonym="At-RS31"
/gene_synonym="ATRSP31"
/gene_synonym="RSP31"
/inference="Similar to RNA sequence,
EST:INSD:EG497148.1,INSD:EH938396.1,INSD:EL982900.1,
INSD:ES128573.1,INSD:BX835734.1,INSD:ES049191.1,
INSD:BP862020.1,INSD:EL177085.1,INSD:ES044744.1,
INSD:EL201140.1,INSD:EH992261.1,INSD:EH911238.1,
INSD:ES056433.1,INSD:ES170845.1,INSD:BP589903.1,
INSD:ES127734.1,INSD:AV815028.1,INSD:BP629068.1,
INSD:EL287158.1,INSD:ES102674.1,INSD:EL138000.1,
INSD:EL305041.1,INSD:BP584343.1,INSD:BP587447.1,
INSD:EL166423.1,INSD:BP801659.1,INSD:ES007005.1,
INSD:EG497149.1,INSD:EH864879.1,INSD:EL240973.1,
INSD:BP632879.1,INSD:EL207244.1,INSD:AV550850.1,
INSD:EH827714.1,INSD:ES014531.1,INSD:EH836105.1,
INSD:AV538539.1,INSD:ES054666.1,INSD:BP583619.1,
INSD:ES043986.1,INSD:EL318501.1,INSD:DR380157.1,
INSD:EL183273.1,INSD:AV831139.1,INSD:AV521352.1,
INSD:BP565328.1,INSD:EL144773.1,INSD:BP814630.1,
INSD:AI997867.1,INSD:ES173515.1,INSD:ES035138.1,
INSD:ES062126.1,INSD:EH932963.1,INSD:BP612065.1,
INSD:EH959304.1,INSD:DR366256.1,INSD:EH922915.1,
INSD:AV815123.1,INSD:BP783675.1,INSD:BP566286.1,
INSD:EL294029.1,INSD:BP635024.1,INSD:BP588480.1,
INSD:ES031149.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX822359.1,INSD:AY125565.1,INSD:X99435.1,
INSD:AF439831.1"
/note="RSP31; FUNCTIONS IN: RNA binding, nucleotide
binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
splicing, via spliceosome, RNA splicing; LOCATED IN:
nuclear speck, spliceosomal complex; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT2G46610.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink)."
/db_xref="TAIR:AT3G61860"
/db_xref="Araport:AT3G61860"
intron_pos 36:1 (1/4)
intron_pos 74:0 (2/4)
intron_pos 150:2 (3/4)
intron_pos 255:2 (4/4)
BEGIN
1 MRPVFVGNFE YETRQSDLER LFDKYGRVDR VDMKSGYAFV YFEDERDAED AIRKLDNFPF
61 GYEKRRLSVE WAKGERGRPR GDAKAPSNLK PTKTLFVINF DPIRTKEHDI EKHFEPYGKV
121 TNVRIRRNFS FVQFETQEDA TKALEATQRS KILDRVVSVE YALKDDDERD DRNGGRSPRR
181 SLSPVYRRRP SPDYGRRPSP GQGRRPSPDY GRARSPEYDR YKGPAAYERR RSPDYGRRSS
241 DYGRQRSPGY DRYRSRSPVP RGRP
//