LOCUS AEE80186.1 354 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana AT hook motif DNA-binding family
protein protein.
ACCESSION CP002686-9045
PROTEIN_ID AEE80186.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G61310"
/gene_synonym="AHL11"
/gene_synonym="AT-hook motif nuclear localized protein 11"
/inference="Similar to RNA sequence,
EST:INSD:ES122460.1,INSD:BE526509.1,INSD:EL970136.1,
INSD:BP648404.1,INSD:EL060830.1,INSD:BP639900.1,
INSD:ES023668.1,INSD:EL116404.1,INSD:DR355340.1,
INSD:EH951236.1,INSD:ES115723.1,INSD:BP812730.1,
INSD:ES214734.1,INSD:EH815201.1,INSD:ES026414.1,
INSD:EL968121.1,INSD:ES083890.1,INSD:ES022104.1,
INSD:EL208200.1,INSD:ES036387.1,INSD:EL208932.1,
INSD:AV792644.1,INSD:DR355339.1,INSD:AU228208.1,
INSD:ES146224.1,INSD:AV440296.1,INSD:EL969426.1,
INSD:BP600759.1,INSD:EH801631.1,INSD:EL968205.1,
INSD:EL986887.1,INSD:AV559836.1,INSD:BP820026.1,
INSD:ES165032.1,INSD:EH984052.1,INSD:EL171719.1,
INSD:ES120035.1,INSD:ES087333.1,INSD:EH965597.1,
INSD:ES166781.1,INSD:ES196075.1,INSD:EG456992.1,
INSD:AV522022.1,INSD:EH840203.1,INSD:ES188597.1,
INSD:EL969102.1,INSD:EL197551.1,INSD:BP657941.1,
INSD:EL047829.1,INSD:ES170833.1,INSD:ES090199.1,
INSD:ES188251.1,INSD:EL107875.1,INSD:ES076990.1,
INSD:ES069890.1,INSD:ES024677.1,INSD:EH970727.1,
INSD:AV556590.1,INSD:ES181141.1,INSD:ES004359.1,
INSD:ES040198.1,INSD:EL983638.1,INSD:BP832954.1,
INSD:ES012638.1,INSD:EL981430.1,INSD:ES049784.1,
INSD:EL981157.1,INSD:ES181003.1,INSD:ES162310.1,
INSD:ES096033.1,INSD:ES213752.1,INSD:ES170272.1,
INSD:ES011313.1,INSD:EL970271.1,INSD:EL969152.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY128386.1,INSD:BT008837.1,INSD:BX824762.1,
INSD:BX823443.1"
/note="AT hook motif DNA-binding family protein; FUNCTIONS
IN: DNA binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif
(InterPro:IPR017956); BEST Arabidopsis thaliana protein
match is: AT hook motif DNA-binding family protein
(TAIR:AT2G45850.2); Has 861 Blast hits to 857 proteins in
59 species: Archae - 0; Bacteria - 6; Metazoa - 83; Fungi
- 11; Plants - 756; Viruses - 0; Other Eukaryotes - 5
(source: NCBI BLink)."
/db_xref="TAIR:AT3G61310"
/db_xref="Araport:AT3G61310"
intron_pos 153:1 (1/4)
intron_pos 176:0 (2/4)
intron_pos 220:0 (3/4)
intron_pos 274:0 (4/4)
BEGIN
1 MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN
61 PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV KRKRGRPRKY GQDGGSVSLA
121 LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK
181 VISFSHQGPR AICVLSASGA VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP
241 NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301 TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
//