LOCUS AEE80168.1 379 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002686-9025
PROTEIN_ID AEE80168.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G61180"
/inference="Similar to RNA sequence,
EST:INSD:ES090322.1,INSD:Z37632.1,INSD:ES130524.1,
INSD:ES159328.1,INSD:BP812654.1,INSD:ES142862.1,
INSD:BP815993.1,INSD:BP607165.1,INSD:BP660083.1,
INSD:ES139256.1,INSD:AV832026.1,INSD:BP832609.1,
INSD:BP620866.1,INSD:BP822654.1,INSD:BP833823.1,
INSD:BP835845.1,INSD:ES123819.1,INSD:ES203103.1,
INSD:AV803667.1,INSD:AV819285.1,INSD:EH901020.1,
INSD:DR749764.1,INSD:BP837742.1,INSD:AI100222.1,
INSD:BP844237.1,INSD:BP603306.1,INSD:EL980948.1,
INSD:N65893.1,INSD:EL291189.1,INSD:AI993057.1,
INSD:EH925231.1,INSD:CB254207.1,INSD:AV811022.1,
INSD:EH854867.1,INSD:EL052393.1,INSD:BP642193.1,
INSD:ES180957.1,INSD:ES207130.1,INSD:BP585148.1,
INSD:EH964400.1,INSD:EL270761.1,INSD:Z46572.1,
INSD:ES175578.1,INSD:BP647422.1,INSD:DR749763.1,
INSD:T41933.1,INSD:BP659749.1,INSD:EL225865.1,
INSD:AV818863.1,INSD:ES148896.1,INSD:BP596965.1,
INSD:ES207025.1,INSD:BP613696.1,INSD:BP627220.1,
INSD:ES167451.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY064638.1,INSD:AY059830.1"
/note="RING/U-box superfamily protein; FUNCTIONS IN: zinc
ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type
(InterPro:IPR001841), Zinc finger, C3HC4 RING-type
(InterPro:IPR018957); BEST Arabidopsis thaliana protein
match is: Zinc finger, C3HC4 type (RING finger) family
protein (TAIR:AT4G11680.1); Has 9287 Blast hits to 9262
proteins in 268 species: Archae - 0; Bacteria - 6; Metazoa
- 2550; Fungi - 691; Plants - 4858; Viruses - 35; Other
Eukaryotes - 1147 (source: NCBI BLink)."
/db_xref="TAIR:AT3G61180"
/db_xref="Araport:AT3G61180"
intron_pos 182:2 (1/4)
intron_pos 222:2 (2/4)
intron_pos 267:0 (3/4)
intron_pos 322:0 (4/4)
BEGIN
1 MNQSIPSTVS SSPTTDTMDA SPLLGRNRRN RPRSSQPIRG AASRLLRRAS NRRMMLREPS
61 VRVREVAAEQ LEERQSQWAY SKPIIVLDIL WNFLFVIVSI AILGFSSDED PDVPLRLWII
121 GYNVQCLFHV GCVIAEYKRR RVANSPPPSG EDSSNHESLS GSEDESDGYS INNTDDDDHG
181 TSFTKHLESA NTMFSFVWWI IGFYWVTADT EALAQSSPQL YWLCVAFLAF DVMFVVICVA
241 VASLIGIAVC CCLPCIIAIL YALADQEGAP DEEIERLLKF KFLTVKNSEK VNGEIRETQG
301 GIMTGLDTES QTERMLLSED AECSICLCAY EDGVELRELP CRHHFHSLCV DKWLRINATC
361 PLCKFNILKN GEPSGSEQV
//