LOCUS AEE79971.1 91 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002686-8761
PROTEIN_ID AEE79971.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="LSM6A"
/locus_tag="AT3G59810"
/gene_synonym="SM-like 6A"
/inference="Similar to RNA sequence,
EST:INSD:DR206034.1,INSD:DR206029.1,INSD:EG495263.1,
INSD:AU236267.1,INSD:EG498677.1,INSD:BP573602.1,
INSD:DR206024.1,INSD:DR206025.1,INSD:DR206031.1,
INSD:DR373888.1,INSD:ES191907.1,INSD:DR206035.1,
INSD:BP785581.1,INSD:ES062895.1,INSD:ES171465.1,
INSD:EG466191.1,INSD:EG466189.1,INSD:EG508994.1,
INSD:EL148308.1,INSD:EH876747.1,INSD:AU227111.1,
INSD:DR206036.1,INSD:BP624397.1,INSD:EL063194.1,
INSD:DR206028.1,INSD:BP868779.1,INSD:ES006461.1,
INSD:DR206023.1,INSD:DR206033.1,INSD:ES053552.1,
INSD:DR206032.1,INSD:EG508993.1,INSD:DR206027.1,
INSD:DR206026.1,INSD:ES177595.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX825935.1,INSD:AY086430.1,INSD:BT002850.1,
INSD:BT004433.1"
/note="Small nuclear ribonucleoprotein family protein;
CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein
(LSM) domain (InterPro:IPR001163), Like-Sm
ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
(InterPro:IPR006649), Like-Sm ribonucleoprotein
(LSM)-related domain (InterPro:IPR010920); BEST
Arabidopsis thaliana protein match is: Small nuclear
ribonucleoprotein family protein (TAIR:AT2G43810.2); Has
1159 Blast hits to 1159 proteins in 301 species: Archae -
313; Bacteria - 0; Metazoa - 297; Fungi - 260; Plants -
135; Viruses - 0; Other Eukaryotes - 154 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G59810"
/db_xref="Araport:AT3G59810"
intron_pos 39:1 (1/2)
intron_pos 77:1 (2/2)
BEGIN
1 MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN
61 GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
//