LOCUS AEE79870.1 444 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana phytochrome interacting factor 3-
like 6 protein.
ACCESSION CP002686-8610
PROTEIN_ID AEE79870.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PIL6"
/locus_tag="AT3G59060"
/gene_synonym="phytochrome interacting factor 3-like 6"
/gene_synonym="PHYTOCHROME-INTERACTING FACTOR 5"
/gene_synonym="PIF5"
/inference="Similar to RNA sequence,
EST:INSD:BP595521.1,INSD:AV521842.1,INSD:BP847883.1,
INSD:EL100345.1,INSD:BP788836.1,INSD:AV534985.1,
INSD:DR749678.1,INSD:EL316603.1,INSD:BP634398.1,
INSD:BU635392.1,INSD:EL277516.1,INSD:EL155141.1,
INSD:DR749664.1,INSD:BP792985.1,INSD:BP614761.1,
INSD:AV804763.1,INSD:EH798196.1,INSD:EL154712.1,
INSD:DR749653.1,INSD:BP795245.1,INSD:BP633546.1,
INSD:EH970116.1,INSD:EH812709.1,INSD:AV787084.1,
INSD:EL136948.1,INSD:BP588431.1,INSD:BP627539.1,
INSD:BP626474.1,INSD:T41998.1,INSD:EL265447.1,
INSD:AV786924.1,INSD:EH951797.1,INSD:DR749672.1,
INSD:EH926021.1,INSD:AV811738.1,INSD:BP593131.1,
INSD:CA781955.1"
/note="phytochrome interacting factor 3-like 6 (PIL6);
FUNCTIONS IN: DNA binding, sequence-specific DNA binding
transcription factor activity; INVOLVED IN: red, far-red
light phototransduction, ethylene biosynthetic process,
circadian rhythm; LOCATED IN: nucleus; EXPRESSED IN: 18
plant structures; EXPRESSED DURING: 10 growth stages;
CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding
domain (InterPro:IPR001092), Helix-loop-helix DNA-binding
(InterPro:IPR011598); BEST Arabidopsis thaliana protein
match is: phytochrome interacting factor 4
(TAIR:AT2G43010.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="TAIR:AT3G59060"
/db_xref="Araport:AT3G59060"
intron_pos 24:2 (1/4)
intron_pos 267:0 (2/4)
intron_pos 289:0 (3/4)
intron_pos 406:0 (4/4)
BEGIN
1 MEQVFADWNF EDNFHMSTNK RSIRPEDELV ELLWRDGQVV LQSQARREPS VQVQTHKQET
61 LRKPNNIFLD NQETVQKPNY AALDDQETVS WIQYPPDDVI DPFESEFSSH FFSSIDHLGG
121 PEKPRTIEET VKHEAQAMAP PKFRSSVITV GPSHCGSNQS TNIHQATTLP VSMSDRSKNV
181 EERLDTSSGG SSGCSYGRNN KETVSGTSVT IDRKRKHVMD ADQESVSQSD IGLTSTDDQT
241 MGNKSSQRSG STRRSRAAEV HNLSERRRRD RINERMKALQ ELIPHCSRTD KASILDEAID
301 YLKSLQMQLQ VMWMGSGMAA AAAAAASPMM FPGVQSSPYI NQMAMQSQMQ LSQFPVMNRS
361 APQNHPGLVC QNPVQLQLQA QNQILSEQLA RYMGGIPQMP PAGNQMQTVQ QQPADMLGFG
421 SPAGPQSQLS APATTDSLHM GKIG
//