LOCUS AEE79645.1 860 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Nucleoporin interacting component
(Nup93/Nic96-like) family protein protein.
ACCESSION CP002686-8304
PROTEIN_ID AEE79645.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G57350"
/inference="Similar to RNA sequence,
EST:INSD:BP779732.1,INSD:BP790793.1,INSD:BX834281.1,
INSD:ES107527.1,INSD:DR373779.1,INSD:BP783968.1,
INSD:AV535136.1,INSD:AV817799.1,INSD:BP589041.1,
INSD:ES104513.1,INSD:ES175639.1,INSD:AI999494.1,
INSD:BP627174.1,INSD:EH799819.1,INSD:ES177726.1,
INSD:ES168915.1,INSD:DR380247.1,INSD:EL981848.1,
INSD:AV806345.1,INSD:AV782633.1,INSD:ES195159.1,
INSD:BP782004.1,INSD:AV804944.1,INSD:AV807982.1,
INSD:BP628229.1,INSD:ES171469.1,INSD:BP589135.1"
/note="Nucleoporin interacting component
(Nup93/Nic96-like) family protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: transport;
LOCATED IN: nuclear pore; CONTAINS InterPro DOMAIN/s:
Nucleoporin interacting component Nup93/Nic96
(InterPro:IPR007231); BEST Arabidopsis thaliana protein
match is: Nucleoporin interacting component
(Nup93/Nic96-like) family protein (TAIR:AT2G41620.1); Has
310 Blast hits to 299 proteins in 130 species: Archae - 0;
Bacteria - 4; Metazoa - 145; Fungi - 101; Plants - 51;
Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink)."
/db_xref="TAIR:AT3G57350"
/db_xref="Araport:AT3G57350"
intron_pos 35:0 (1/14)
intron_pos 65:2 (2/14)
intron_pos 88:0 (3/14)
intron_pos 108:0 (4/14)
intron_pos 138:0 (5/14)
intron_pos 224:0 (6/14)
intron_pos 256:0 (7/14)
intron_pos 301:0 (8/14)
intron_pos 319:0 (9/14)
intron_pos 347:0 (10/14)
intron_pos 377:0 (11/14)
intron_pos 678:0 (12/14)
intron_pos 738:2 (13/14)
intron_pos 836:0 (14/14)
BEGIN
1 MANDQEMSGW TDLLHSSTKL LEQAAPSSQF PPLQRNLDQL EALSRKLKAK TLRNEAPSQS
61 IAATRLLARE GINADQLSRD LKSFELKTTF EDVFPAETTS VEEYLQQVHE MAMVSAIQEA
121 QKDNVRSFNN YMLKVLEEDC IKEKRDFLHS LSKTSMLPKT KMINSSRGSH AGSLVPLSPQ
181 VSSKPGTELV SMTNKPIHEK KAYVYAEVVK KLNSARERGL PFKLATLFNG AYESLEIDLT
241 RGKSVNMQKL WQLIQGMTGE ESAVQHGVSK RMALVIGARR HLECGHGKHI MDTIQSHPTQ
301 AALGGSVGNL QRIRAFLRIR LRDYGSLDFD SVDARRQPPV DTTWQQIYFC LRTGYYEEAR
361 EIAQSSRSSQ QQFAPLLTEW ITTGGTVAAQ TAATASEECE KLLRMGDRFG QTTYDKKKLL
421 LYTIISGSRR QIDRIMRDFS TLFNTIEDFL WFKLSCVRDV AGGSSSMIVN DGLVPYSLDD
481 LQAYLNKFEP SYYTKNGKDP LVYPYVLLLS IQLLPAIMHM SNEAGDEGYN IDAVHVAISL
541 VDHSILSEGS GTGRKLSVMD ANAEASSMIR QYGSMYLHHG DLQMTLEYYA QAAIAVGGGQ
601 QAWSGRSNVD QQRQRNLMLK QLLTEILSQE DGIHFLLGAR GSGEEGELGR FLPDIKLRQQ
661 FLIEAAHQFQ EAGLYDKSIE LQKRVGAFSS ALETINKCLS EAICSLVRGR PDGESRTEGL
721 VLSGNDILNS YKYHPDVSAQ ERHLVMEQET ILRELEAILS IHKLARLNKH LDAIREVAKL
781 PFLHLDPRQP DTTSDEFQKA SSYFQTCVPD LLKVALTCLD NVADTDGSIR GMRSKIAGFL
841 ASNTQRNWPR DLYEKIARSF
//