LOCUS AEE79612.1 222 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Eukaryotic rpb5 RNA polymerase subunit
family protein protein.
ACCESSION CP002686-8260
PROTEIN_ID AEE79612.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="NRPE5"
/locus_tag="AT3G57080"
/gene_synonym="B"
/gene_synonym="RNA POLYMERASE II FIFTH LARGEST SUBUNIT"
/gene_synonym="RPB5B"
/inference="Similar to RNA sequence,
EST:INSD:DR371430.1,INSD:EG467210.1,INSD:EH795795.1,
INSD:AV566846.1,INSD:EL013835.1,INSD:EH895380.1,
INSD:ES002992.1,INSD:EH827851.1,INSD:EH829367.1,
INSD:ES160259.1,INSD:EL001121.1,INSD:EH904570.1,
INSD:ES039835.1,INSD:DR182765.1,INSD:DR182767.1,
INSD:EL294207.1,INSD:ES021397.1,INSD:EL173092.1,
INSD:EL065875.1,INSD:ES110839.1,INSD:EG467209.1,
INSD:BP860492.1,INSD:DR182766.1,INSD:EH893928.1,
INSD:BP847503.1,INSD:CB257075.1,INSD:EL290501.1,
INSD:EH959329.1,INSD:EL327881.1,INSD:ES102219.1,
INSD:EH947519.1,INSD:EL029762.1,INSD:EL244711.1,
INSD:Z18181.1,INSD:BP668769.1,INSD:EL154938.1,
INSD:ES031990.1,INSD:EH888720.1,INSD:ES183448.1,
INSD:EH969771.1,INSD:EL180098.1,INSD:EL174914.1,
INSD:AV522572.1,INSD:EL059785.1,INSD:BP845397.1,
INSD:ES056835.1,INSD:AU231190.1,INSD:EL084196.1,
INSD:ES202707.1,INSD:EH808678.1,INSD:AU239836.1,
INSD:BP854061.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK118958.1,INSD:BT005410.1,INSD:AY088640.1"
/note="NRPE5; FUNCTIONS IN: DNA-directed RNA polymerase
activity, DNA binding; INVOLVED IN: transcription; LOCATED
IN: DNA-directed RNA polymerase V complex; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5,
N-terminal (InterPro:IPR005571), RNA polymerase, subunit
H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA
polymerase, RPB5 subunit (InterPro:IPR014381); BEST
Arabidopsis thaliana protein match is: RNA polymerase II
fifth largest subunit, D (TAIR:AT2G41340.1); Has 910 Blast
hits to 910 proteins in 323 species: Archae - 199;
Bacteria - 0; Metazoa - 157; Fungi - 216; Plants - 117;
Viruses - 5; Other Eukaryotes - 216 (source: NCBI BLink)."
/db_xref="TAIR:AT3G57080"
/db_xref="Araport:AT3G57080"
intron_pos 85:0 (1/3)
intron_pos 144:0 (2/3)
intron_pos 182:0 (3/3)
BEGIN
1 MEVKGKETAS VLCLSKYVDL SSEESHRYYL ARRNGLQMLR DRGYEVSDED INLSLHDFRT
61 VYGERPDVDR LRISALHRSD STKKVKIVFF GTSMVKVNAI RSVVADILSQ ETITGLILVL
121 QNHVTNQALK AIELFSFKVE IFQITDLLVN ITKHSLKPQH QVLNDEEKTT LLKKFSIEEK
181 QLPRISKKDA IVRYYGLEKG QVVKVNYRGE LTESHVAFRC VW
//