LOCUS AEE79551.1 353 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Single-stranded nucleic acid binding
R3H protein protein.
ACCESSION CP002686-8165
PROTEIN_ID AEE79551.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G56680"
/inference="Similar to RNA sequence,
EST:INSD:EL295503.1,INSD:EL319169.1,INSD:DR252531.1,
INSD:BP563569.1,INSD:EL236621.1,INSD:EL273799.1,
INSD:ES100032.1,INSD:BP801676.1,INSD:ES077064.1,
INSD:EL968190.1,INSD:N95949.1,INSD:AV542662.1,
INSD:DR252528.1,INSD:DR252530.1,INSD:EH857687.1,
INSD:ES039579.1,INSD:EL235319.1,INSD:EG480217.1,
INSD:ES108753.1,INSD:DR252532.1,INSD:BP813593.1,
INSD:BP577622.1,INSD:AV796286.1,INSD:DR252539.1,
INSD:BP660056.1,INSD:BX834444.1,INSD:BP582220.1,
INSD:DR374275.1,INSD:BP560976.1,INSD:EL135061.1,
INSD:EL997793.1,INSD:DR252526.1,INSD:BP781141.1,
INSD:AV806249.1,INSD:EL013859.1,INSD:EL172673.1,
INSD:AV784160.1,INSD:DR252533.1,INSD:AA712230.1,
INSD:EH985685.1,INSD:EL226282.1,INSD:BP782814.1,
INSD:EL969984.1,INSD:EL970503.1,INSD:DR252525.1,
INSD:BP645357.1,INSD:EL259268.1,INSD:EL126466.1,
INSD:AV811754.1,INSD:ES185494.1,INSD:EL974975.1,
INSD:BP564415.1,INSD:ES122956.1,INSD:BP803028.1,
INSD:EL166120.1,INSD:EH872939.1,INSD:BP629691.1,
INSD:EL983975.1,INSD:EL971969.1,INSD:BP797476.1,
INSD:AI993101.1,INSD:DR252535.1,INSD:EL968883.1,
INSD:ES114180.1,INSD:DR377261.1,INSD:EL215480.1,
INSD:DR252534.1,INSD:DR252536.1,INSD:DR252529.1,
INSD:T44821.1,INSD:EH877566.1,INSD:EL993161.1,
INSD:EH980184.1,INSD:DR252537.1,INSD:BP855745.1,
INSD:EH826665.1,INSD:AV439757.1,INSD:EL073154.1,
INSD:EH875587.1,INSD:DR252538.1,INSD:EL105777.1,
INSD:EH885457.1,INSD:DR252527.1,INSD:BP620821.1,
INSD:EL971876.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823331.1,INSD:AY074572.1,INSD:BX825727.1,
INSD:AY086793.1,INSD:BX823287.1,INSD:AY116940.1"
/note="Single-stranded nucleic acid binding R3H protein;
FUNCTIONS IN: nucleic acid binding; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Single-stranded nucleic acid binding R3H
(InterPro:IPR001374); BEST Arabidopsis thaliana protein
match is: Single-stranded nucleic acid binding R3H protein
(TAIR:AT2G40960.1); Has 389 Blast hits to 389 proteins in
86 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi
- 53; Plants - 134; Viruses - 0; Other Eukaryotes - 6
(source: NCBI BLink)."
/db_xref="TAIR:AT3G56680"
/db_xref="Araport:AT3G56680"
intron_pos 41:1 (1/3)
intron_pos 250:2 (2/3)
intron_pos 338:0 (3/3)
BEGIN
1 MDVVLPETAV VTGGSVIGDY GFNVDPFLVE ALHNSRHRLT ILRMELDVQR LLQNPEQQQF
61 EFQHFPTSYL RLAAHRVANH YGLATAVQES GADGNENRIL VTKTTESKFP AVRLSEIPVA
121 KQSENGKFES RKVSIKTRPS KGSGYGAGDL EKNRGPLRSV EERKEEYDKA RERIFSGLTG
181 LSCDDSSSET QVYERNASLS RDDKQVSKNA YVEVKKNLSI RESGPTSRVA IFRDREKDRF
241 DPDYDRRHQR YIRSLPVNQN FNLPPFNIQQ IPTPYYEMGF TGYNQIPSPP APLGFGPHPS
301 SIMSPYGTTM DAMYMHWPNA AMMYAHPYEQ FRNGSLQAQF VQQPLSFDYM QNR
//