LOCUS AEE79486.1 900 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana eukaryotic translation initiation
factor 3C protein.
ACCESSION CP002686-8069
PROTEIN_ID AEE79486.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="EIF3C"
/locus_tag="AT3G56150"
/gene_synonym="ATEIF3C-1"
/gene_synonym="ATTIF3C1"
/gene_synonym="EIF3C-1"
/gene_synonym="EUKARYOTIC TRANSLATION INITIATION FACTOR 3
SUBUNIT 8"
/gene_synonym="eukaryotic translation initiation factor
3C"
/gene_synonym="TIF3C1"
/inference="Similar to RNA sequence,
EST:INSD:ES046214.1,INSD:EL982298.1,INSD:ES071463.1,
INSD:AV529944.1,INSD:ES073394.1,INSD:EL263594.1,
INSD:EL052995.1,INSD:EG527825.1,INSD:ES077015.1,
INSD:EL256900.1,INSD:ES147059.1,INSD:EL001801.1,
INSD:EG521484.1,INSD:EH907212.1,INSD:ES182313.1,
INSD:EL003882.1,INSD:EL320862.1,INSD:ES173146.1,
INSD:AV547468.1,INSD:ES186883.1,INSD:ES035080.1,
INSD:ES181904.1,INSD:BP646801.1,INSD:EL141373.1,
INSD:ES064085.1,INSD:EH805296.1,INSD:EL008450.1,
INSD:EG524878.1,INSD:EL212976.1,INSD:ES165206.1,
INSD:ES197527.1,INSD:EL076060.1,INSD:EL239054.1,
INSD:ES111441.1,INSD:ES144075.1,INSD:ES079864.1,
INSD:ES156274.1,INSD:ES182915.1,INSD:ES204053.1,
INSD:EL120487.1,INSD:EH954142.1,INSD:BE530161.1,
INSD:AV790796.1,INSD:EG522744.1,INSD:EH835562.1,
INSD:ES139007.1,INSD:EL076083.1,INSD:EH881736.1,
INSD:EH909915.1,INSD:EH855546.1,INSD:EL223264.1,
INSD:EL310168.1,INSD:ES170345.1,INSD:EH884001.1,
INSD:F19813.1,INSD:ES084377.1,INSD:EL301258.1,
INSD:BP779891.1,INSD:ES069875.1,INSD:EL206998.1,
INSD:ES095262.1,INSD:EH936056.1,INSD:BE525190.1,
INSD:EH943888.1,INSD:EG522733.1,INSD:EH907341.1,
INSD:EL026796.1,INSD:EL041687.1,INSD:EH861537.1,
INSD:EL287550.1,INSD:EH797784.1,INSD:EH840693.1,
INSD:EL022083.1,INSD:EH982170.1,INSD:EL280983.1,
INSD:ES028541.1,INSD:ES183195.1,INSD:EH853138.1,
INSD:EH893486.1,INSD:ES078613.1,INSD:EL117928.1,
INSD:EH818584.1,INSD:AI993451.1,INSD:EH842300.1,
INSD:EL285227.1,INSD:EL007965.1,INSD:BP652345.1,
INSD:AV825263.1,INSD:ES110702.1,INSD:EL071443.1,
INSD:CF773725.1,INSD:EL182514.1,INSD:EH834209.1,
INSD:EH896218.1,INSD:EL249180.1,INSD:EH975047.1,
INSD:AV533234.1,INSD:EL246334.1,INSD:EL324865.1,
INSD:ES184507.1,INSD:CK118959.1,INSD:EL177605.1,
INSD:ES117195.1,INSD:BP648547.1,INSD:EL253450.1,
INSD:EL167361.1,INSD:EL140448.1,INSD:EH978297.1,
INSD:EL252968.1,INSD:ES183763.1,INSD:EH802093.1,
INSD:EG434796.1,INSD:EL106464.1,INSD:EH842124.1,
INSD:EH969436.1,INSD:AV791052.1,INSD:EH988261.1,
INSD:EG495054.1,INSD:EH907525.1,INSD:EH818425.1,
INSD:EG524879.1,INSD:EL040962.1,INSD:BP656607.1,
INSD:EH795989.1,INSD:N37787.1,INSD:BP606759.1,
INSD:EH836068.1,INSD:EL073416.1,INSD:EL305717.1,
INSD:BP623246.1,INSD:EG495053.1,INSD:EL339120.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT001961.1,INSD:AF040102.1,INSD:AY064006.1"
/note="eukaryotic translation initiation factor 3C
(EIF3C); FUNCTIONS IN: translation initiation factor
activity; INVOLVED IN: translational initiation; LOCATED
IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Winged helix-turn-helix transcription repressor
DNA-binding (InterPro:IPR011991), Proteasome component
(PCI) domain (InterPro:IPR000717), Eukaryotic translation
initiation factor 3 subunit 8, N-terminal
(InterPro:IPR008905); BEST Arabidopsis thaliana protein
match is: eukaryotic translation initiation factor 3
subunit C2 (TAIR:AT3G22860.1); Has 10199 Blast hits to
6703 proteins in 565 species: Archae - 12; Bacteria -
1147; Metazoa - 3521; Fungi - 1145; Plants - 1081; Viruses
- 87; Other Eukaryotes - 3206 (source: NCBI BLink)."
/db_xref="TAIR:AT3G56150"
/db_xref="Araport:AT3G56150"
intron_pos 9:0 (1/2)
intron_pos 594:0 (2/2)
BEGIN
1 MTSRFFTQVG SESEDESDYE VEVNEVQNDD VNNRYLQSGS EDDDDTDTKR VVKPAKDKRF
61 EEMTYTVDQM KNAMKINDWV SLQENFDKVN KQLEKVMRIT EAVKPPTLYI KTLVMLEDFL
121 NEALANKEAK KKMSTSNSKA LNSMKQKLKK NNKLYEDDIN KYREAPEVEE EKQPEDDDDD
181 DDDDDEVEDD DDSSIDGPTV DPGSDVDEPT DNLTWEKMLS KKDKLLEKLM NKDPKEITWD
241 WVNKKFKEIV AARGKKGTAR FELVDQLTHL TKIAKTPAQK LEILFSVISA QFDVNPGLSG
301 HMPINVWKKC VLNMLTILDI LVKYSNIVVD DTVEPDENET SKPTDYDGKI RVWGNLVAFL
361 ERVDTEFFKS LQCIDPHTRE YVERLRDEPM FLALAQNIQD YFERMGDFKA AAKVALRRVE
421 AIYYKPQEVY DAMRKLAELV EEEEETEEAK EESGPPTSFI VVPEVVPRKP TFPESSRAMM
481 DILVSLIYRN GDERTKARAM LCDINHHALM DNFVTARDLL LMSHLQDNIQ HMDISTQILF
541 NRTMAQLGLC AFRAGMITES HSCLSELYSG QRVRELLAQG VSQSRYHEKT PEQERMERRR
601 QMPYHMHLNL ELLEAVHLIC AMLLEVPNMA ANSHDAKRRV ISKNFRRLLE ISERQAFTAP
661 PENVRDHVMA ATRALTKGDF QKAFEVLNSL EVWRLLKNRD SILDMVKDRI KEEALRTYLF
721 TYSSSYESLS LDQLAKMFDV SEPQVHSIVS KMMINEELHA SWDQPTRCIV FHEVQHSRLQ
781 SLAFQLTEKL SILAESNERA MESRTGGGGL DLSSRRRDNN QDYAGAASGG GGYWQDKANY
841 GQGRQGNRSG YGGGRSSGQN GQWSGQNRGG GYAGRVGSGN RGMQMDGSSR MVSLNRGVRT
//