LOCUS AEE79439.2 135 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana GATA type zinc finger transcription
factor family protein protein.
ACCESSION CP002686-8000
PROTEIN_ID AEE79439.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="WLIM2b"
/locus_tag="AT3G55770"
/inference="Similar to RNA sequence,
EST:INSD:BP569795.1,INSD:BP626095.1,INSD:BP833465.1,
INSD:BP866234.1,INSD:ES057485.1,INSD:BP632069.1,
INSD:CB257341.1,INSD:ES210959.1,INSD:BP841708.1,
INSD:AA067578.1,INSD:CB255517.1,INSD:EL248816.1,
INSD:BP866615.1,INSD:ES025862.1,INSD:ES094455.1,
INSD:DR241860.1,INSD:BP657179.1,INSD:EL203605.1,
INSD:BP621412.1,INSD:BP606319.1,INSD:BP847935.1,
INSD:DR241852.1,INSD:CB254107.1,INSD:EL052135.1,
INSD:EL083589.1,INSD:BP564751.1,INSD:DR241862.1,
INSD:BE528622.1,INSD:BP837676.1,INSD:BP627677.1,
INSD:EL082198.1,INSD:ES000644.1,INSD:DR241857.1,
INSD:EL172679.1,INSD:BP823726.1,INSD:AV564353.1,
INSD:BP572103.1,INSD:BP609287.1,INSD:EL084005.1,
INSD:BP834345.1,INSD:BP609836.1,INSD:EL034151.1,
INSD:BP859334.1,INSD:BP851720.1,INSD:DR241853.1,
INSD:BP865628.1,INSD:BP602612.1,INSD:EH844717.1,
INSD:EH970252.1,INSD:BP577901.1,INSD:EL236711.1,
INSD:EL240539.1,INSD:BP851492.1,INSD:CF772979.1,
INSD:BP627488.1,INSD:BP657284.1,INSD:EL078362.1,
INSD:AI100401.1,INSD:EL256305.1,INSD:BP865199.1,
INSD:BP565761.1,INSD:EH857249.1,INSD:EH797846.1,
INSD:EH847961.1,INSD:BP603427.1,INSD:BP598301.1,
INSD:EH938660.1,INSD:AV813672.1,INSD:EL218021.1,
INSD:ES110674.1,INSD:BP833827.1,INSD:EL144074.1,
INSD:EH853348.1,INSD:BP853250.1,INSD:BP817357.1,
INSD:ES177189.1,INSD:DR241863.1,INSD:ES056604.1,
INSD:BP861509.1,INSD:ES185588.1,INSD:BP805111.1,
INSD:ES060569.1,INSD:BP614623.1,INSD:DR241855.1,
INSD:BP649953.1,INSD:BP607192.1,INSD:EL330152.1,
INSD:BP652207.1,INSD:EH953354.1,INSD:BP603435.1,
INSD:BP840936.1,INSD:BP616759.1,INSD:EL165668.1,
INSD:BP670841.1,INSD:BP650908.1,INSD:BP635262.1,
INSD:ES100290.1,INSD:BP624866.1,INSD:EL329525.1,
INSD:BP842482.1,INSD:ES193735.1,INSD:EL175285.1,
INSD:BP666682.1,INSD:DR241856.1,INSD:BP617457.1,
INSD:EL025393.1,INSD:AV544706.1,INSD:BP842007.1,
INSD:BP854626.1,INSD:ES194568.1,INSD:EL010437.1,
INSD:AV814356.1,INSD:BP863546.1,INSD:BP832969.1,
INSD:BP668517.1,INSD:BP633806.1,INSD:BP655708.1,
INSD:EH816266.1,INSD:EL028570.1,INSD:AV534878.1,
INSD:BP602414.1,INSD:BP586416.1,INSD:ES172184.1,
INSD:BP579090.1,INSD:EL141010.1,INSD:ES094451.1,
INSD:N38411.1,INSD:EL025913.1,INSD:DR241854.1,
INSD:ES118711.1,INSD:DR241858.1,INSD:DR241869.1,
INSD:EL259782.1,INSD:EH909601.1,INSD:EL967418.1,
INSD:CB264898.1,INSD:EH982878.1,INSD:BP629093.1,
INSD:BP809594.1,INSD:EL317052.1,INSD:BP825244.1,
INSD:DR241867.1,INSD:EL082203.1,INSD:BP620957.1,
INSD:BP568267.1,INSD:EL042023.1,INSD:EL026076.1,
INSD:BP844334.1,INSD:ES077325.1,INSD:ES168115.1,
INSD:BP807861.1,INSD:BP809411.1,INSD:BP612331.1,
INSD:BP830891.1,INSD:BP611094.1,INSD:AV789436.1,
INSD:BP562171.1,INSD:BP609105.1,INSD:ES079070.1,
INSD:BP592133.1,INSD:BP614462.1,INSD:BP633854.1,
INSD:EH912467.1,INSD:ES092321.1,INSD:AA042777.1,
INSD:EG467301.1,INSD:EH952540.1,INSD:ES042724.1,
INSD:ES004841.1,INSD:EH946299.1,INSD:EH869148.1,
INSD:BP599366.1,INSD:AV539402.1,INSD:ES109201.1,
INSD:ES105790.1,INSD:EH877884.1,INSD:BP841382.1,
INSD:BP600649.1,INSD:BP835619.1,INSD:ES126057.1,
INSD:BP565750.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX822901.1"
/note="GATA type zinc finger transcription factor family
protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis
thaliana protein match is: GATA type zinc finger
transcription factor family protein (TAIR:AT2G39900.1);
Has 3096 Blast hits to 2402 proteins in 171 species:
Archae - 0; Bacteria - 0; Metazoa - 2277; Fungi - 61;
Plants - 547; Viruses - 0; Other Eukaryotes - 211 (source:
NCBI BLink)."
/db_xref="TAIR:AT3G55770"
/db_xref="Araport:AT3G55770"
intron_pos 46:0 (1/4)
intron_pos 79:1 (2/4)
intron_pos 91:0 (3/4)
intron_pos 115:2 (4/4)
BEGIN
1 MSFTGTQQKC KACEKTVYAV ELLSADGVGY HKSCFKCTHC KSRLQLSSYS SMEGVLYCKP
61 HFEQLFKESG SFNKNFQSPA KSADKSTPEL TRTPSRVAGR FSGTQEKCAT CSKTVYIIPS
121 VTENLQGNQM FCTDA
//