LOCUS AEE79387.1 262 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SC35-like splicing factor 30 protein.
ACCESSION CP002686-7935
PROTEIN_ID AEE79387.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SCL30"
/locus_tag="AT3G55460"
/gene_synonym="At-SCL30"
/gene_synonym="SC35-like splicing factor 30"
/inference="Similar to RNA sequence,
EST:INSD:BP607869.1,INSD:ES090729.1,INSD:BP587394.1,
INSD:BP842221.1,INSD:EH910238.1,INSD:BP821397.1,
INSD:BP655889.1,INSD:BP624845.1,INSD:DR269077.1,
INSD:EG496952.1,INSD:BP823516.1,INSD:EH860346.1,
INSD:BP621115.1,INSD:EL270285.1,INSD:EG449270.1,
INSD:ES087226.1,INSD:ES124665.1,INSD:ES002431.1,
INSD:DR269078.1,INSD:BP620246.1,INSD:BP651893.1,
INSD:BP854371.1,INSD:BP643884.1,INSD:DR269093.1,
INSD:DR269080.1,INSD:DR269081.1,INSD:BP597065.1,
INSD:ES128771.1,INSD:DR269087.1,INSD:AV810292.1,
INSD:BP864172.1,INSD:EL026895.1,INSD:EL971537.1,
INSD:BP860221.1,INSD:ES105361.1,INSD:EL072544.1,
INSD:BP822913.1,INSD:BP866186.1,INSD:DR269086.1,
INSD:EG449271.1,INSD:EG496953.1,INSD:EH875097.1,
INSD:EL303795.1,INSD:ES215475.1,INSD:BP640228.1,
INSD:EL998127.1,INSD:ES190575.1,INSD:BP642888.1,
INSD:DR269091.1,INSD:EG444918.1,INSD:DR269079.1,
INSD:DR269092.1,INSD:DR269090.1,INSD:BP646881.1,
INSD:EH940347.1,INSD:BP606875.1,INSD:BP607972.1,
INSD:BP662670.1,INSD:BP819284.1,INSD:EL980118.1,
INSD:EL193192.1,INSD:BP662935.1,INSD:BP835168.1,
INSD:BP621143.1,INSD:EG455721.1,INSD:BP653787.1,
INSD:EL296671.1,INSD:BP839302.1,INSD:EL265816.1,
INSD:DR269082.1,INSD:EH993111.1,INSD:AV441262.1,
INSD:EG455722.1,INSD:EL120271.1,INSD:CK121229.1,
INSD:BP663059.1,INSD:BP831835.1,INSD:AV442125.1,
INSD:EH845894.1,INSD:BP828707.1,INSD:DR269084.1,
INSD:BP578361.1,INSD:ES015920.1,INSD:BP623484.1,
INSD:AV830143.1,INSD:DR269085.1,INSD:BP805869.1,
INSD:BP623130.1,INSD:BP656210.1,INSD:T42222.1,
INSD:EL004488.1,INSD:BP841204.1,INSD:BP634872.1,
INSD:DR269088.1,INSD:ES208505.1,INSD:BP838878.1,
INSD:EL977151.1,INSD:ES004515.1,INSD:BP635556.1,
INSD:EL273945.1,INSD:DR269083.1,INSD:DR269089.1,
INSD:EL018136.1,INSD:ES154926.1,INSD:EL315296.1,
INSD:EL306548.1,INSD:CB260862.1,INSD:EH858495.1,
INSD:BP579225.1,INSD:BP659214.1,INSD:BP641530.1,
INSD:EL154330.1,INSD:BP586456.1,INSD:BP607864.1,
INSD:BP646349.1,INSD:BP655135.1,INSD:BP581737.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY086131.1,INSD:AY128836.1,INSD:AY099649.1,
INSD:BX824297.1"
/note="SC35-like splicing factor 30 (SCL30); FUNCTIONS IN:
RNA binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: response to oxidative stress, nuclear mRNA
splicing, via spliceosome, RNA splicing; LOCATED IN:
nuclear speck; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: SC35-like splicing factor 30A
(TAIR:AT3G13570.1); Has 999798 Blast hits to 999477
proteins in 36048 species: Archae - 21842; Bacteria -
604317; Metazoa - 201442; Fungi - 24075; Plants - 55248;
Viruses - 69771; Other Eukaryotes - 23103 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G55460"
/db_xref="Araport:AT3G55460"
intron_pos 59:2 (1/6)
intron_pos 85:2 (2/6)
intron_pos 142:2 (3/6)
intron_pos 153:1 (4/6)
intron_pos 179:2 (5/6)
intron_pos 229:2 (6/6)
BEGIN
1 MRRYSPPYYS PPRRGYGGRG RSPPPPPPRR GYGGGGGGGG RRGSSHGSLL VRNIPLDCRP
61 EELREPFERF GPVRDVYIPR DYYSGQPRGF AFVEFVDAYD AGEAQRSMNR RSFAGREITV
121 VVASESRKRP EEMRVKTRTR SREPSGSRDR SHGRSRSRSI SRSRSPRRPS DSRSRYRSRS
181 YSPAPRRRGG PPRGEEDENY SRRSYSPGYE GAAAAAPDRD RNGDNEIREK PGYEAEDRRR
241 GGRAVSRSPS GSRSRSVEVS PR
//