LOCUS AEE79342.1 246 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Chalcone-flavanone isomerase family
protein protein.
ACCESSION CP002686-7882
PROTEIN_ID AEE79342.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TT5"
/locus_tag="AT3G55120"
/gene_synonym="A11"
/gene_synonym="AtCHI"
/gene_synonym="CFI"
/gene_synonym="CHALCONE FLAVANONE ISOMERASE"
/gene_synonym="chalcone isomerase"
/gene_synonym="CHI"
/gene_synonym="TRANSPARENT TESTA 5"
/inference="Similar to RNA sequence,
EST:INSD:CK118698.1,INSD:EL239385.1,INSD:EH974952.1,
INSD:N65873.1,INSD:CF773061.1,INSD:DR211775.1,
INSD:BP790319.1,INSD:EL079904.1,INSD:CK120810.1,
INSD:EH871534.1,INSD:DR211768.1,INSD:DR211771.1,
INSD:ES044558.1,INSD:BP819155.1,INSD:EL010244.1,
INSD:DR211769.1,INSD:DR211772.1,INSD:EL340760.1,
INSD:DR211770.1,INSD:ES431068.1,INSD:EL107674.1,
INSD:AI994992.1,INSD:EH975075.1,INSD:EL139281.1,
INSD:DR370306.1,INSD:AU236874.1,INSD:AU227878.1,
INSD:DR211774.1,INSD:ES144945.1,INSD:DR211773.1,
INSD:EH811261.1,INSD:BP859967.1,INSD:DR211777.1,
INSD:DR211776.1,INSD:EG503219.1,INSD:CK121935.1,
INSD:CF774157.1,INSD:BP591580.1,INSD:EH961766.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY086088.1,INSD:BT004265.1,INSD:BX822876.1,
INSD:BT005528.1,INSD:AJ418046.1"
/note="TRANSPARENT TESTA 5 (TT5); FUNCTIONS IN: chalcone
isomerase activity; INVOLVED IN: response to UV, response
to UV-B, response to karrikin, response to sucrose
stimulus, flavonoid biosynthetic process; LOCATED IN:
plant-type vacuole membrane, endoplasmic reticulum,
extrinsic to endoplasmic reticulum membrane, nucleus;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Chalcone
isomerase, subgroup (InterPro:IPR003466), Chalcone
isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone
isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana
protein match is: Chalcone-flavanone isomerase family
protein (TAIR:AT5G66230.2); Has 391 Blast hits to 390
proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 390; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink)."
/db_xref="TAIR:AT3G55120"
/db_xref="Araport:AT3G55120"
intron_pos 45:1 (1/3)
intron_pos 98:1 (2/3)
intron_pos 173:0 (3/3)
BEGIN
1 MSSSNACASP SPFPAVTKLH VDSVTFVPSV KSPASSNPLF LGGAGVRGLD IQGKFVIFTV
61 IGVYLEGNAV PSLSVKWKGK TTEELTESIP FFREIVTGAF EKFIKVTMKL PLTGQQYSEK
121 VTENCVAIWK QLGLYTDCEA KAVEKFLEIF KEETFPPGSS ILFALSPTGS LTVAFSKDDS
181 IPETGIAVIE NKLLAEAVLE SIIGKNGVSP GTRLSVAERL SQLMMKNKDE KEVSDHSVEE
241 KLAKEN
//