LOCUS AEE79263.2 1218 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Structural maintenance of chromosomes
(SMC) family protein protein.
ACCESSION CP002686-7774
PROTEIN_ID AEE79263.2
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TTN8"
/locus_tag="AT3G54670"
/gene_synonym="ATSMC1"
/gene_synonym="SMC1"
/gene_synonym="STRUCTURAL MAINTENANCE OF CHROMOSOMES 1"
/gene_synonym="TITAN8"
/inference="Similar to RNA sequence,
EST:INSD:EG525759.1,INSD:ES180954.1,INSD:EL967628.1,
INSD:CB252816.1,INSD:ES186808.1,INSD:CF773955.1,
INSD:BP789399.1,INSD:AA720322.1,INSD:ES110044.1,
INSD:ES072341.1,INSD:ES190517.1,INSD:EL985982.1,
INSD:AV556446.1,INSD:AV793058.1,INSD:CD534637.1,
INSD:ES190945.1,INSD:ES070234.1,INSD:ES077173.1,
INSD:EL225065.1,INSD:ES048397.1,INSD:AU226456.1,
INSD:ES092229.1,INSD:EL322233.1,INSD:ES156348.1,
INSD:ES120968.1,INSD:ES132225.1,INSD:AU235707.1,
INSD:ES123214.1,INSD:ES186132.1,INSD:ES104712.1,
INSD:ES016623.1,INSD:ES105664.1,INSD:DR233520.1,
INSD:EH796528.1,INSD:AA395018.1,INSD:EL967667.1,
INSD:EG525758.1,INSD:ES153152.1,INSD:DR233519.1,
INSD:EH944723.1,INSD:EH868188.1,INSD:BP789821.1,
INSD:T41869.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK227781.1"
/note="TITAN8 (TTN8); FUNCTIONS IN: transporter activity,
ATP binding; INVOLVED IN: sister chromatid cohesion,
chromosome segregation; LOCATED IN: cohesin complex,
nucleus, chloroplast; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935),
RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395);
BEST Arabidopsis thaliana protein match is: structural
maintenance of chromosome 3 (TAIR:AT5G48600.1); Has 200429
Blast hits to 91047 proteins in 3650 species: Archae -
2506; Bacteria - 36447; Metazoa - 81443; Fungi - 15311;
Plants - 9097; Viruses - 946; Other Eukaryotes - 54679
(source: NCBI BLink)."
/db_xref="TAIR:AT3G54670"
/db_xref="Araport:AT3G54670"
intron_pos 148:0 (1/17)
intron_pos 227:0 (2/17)
intron_pos 305:0 (3/17)
intron_pos 384:2 (4/17)
intron_pos 473:2 (5/17)
intron_pos 564:0 (6/17)
intron_pos 605:2 (7/17)
intron_pos 642:1 (8/17)
intron_pos 678:1 (9/17)
intron_pos 725:0 (10/17)
intron_pos 755:0 (11/17)
intron_pos 824:2 (12/17)
intron_pos 881:1 (13/17)
intron_pos 918:0 (14/17)
intron_pos 1043:2 (15/17)
intron_pos 1127:2 (16/17)
intron_pos 1203:2 (17/17)
BEGIN
1 MPAIQSPSGK ILQLEMENFK SYKGHQLVGP FKDFTAIIGP NGSGKSNLMD AISFVLGVRT
61 GQLRGSQLKD LIYAFDDRDK EQRGRKAFVR LVYQMDDGVE LRFTRSITSA GGSEYRIDNR
121 VVNLDEYNGK LRSLGILVKA RNFLVFQGDV ESIASKNPKE LTGLLEEISG SEELKKEYEG
181 LEEKKASAEE KAALIYQKKK TIGNEKKLKK AQKEEAEKHL RLQEELKALK RERFLWQLYN
241 IENDIEKANE DVDSEKSNRK DVMRELEKFE REAGKRKVEQ AKYLKEIAQR EKKIAEKSSK
301 LGKIQPELLR FKEEIARIKA KIETNRKDVD KRKKEKGKHS KEIEQMQKSI KELNKKMELF
361 NKKRQDSSGK LPMLDSQLQD YFRLKEEAGM KTIKLRDEHE VLERQRRTDL EALRNLEENY
421 QQLINRKNDL DEQIKRFKDR QGEIETSSSK YKNETTSLKT ELRALQEKHV NAREASAKLK
481 TRIAELEDQL SDLTAERYEN ERDSRLTQAV ESLKRLFQGV HGRMTDLCRP NRKKYNLAVT
541 VAMGRFMDAV VVEDENTGKD CIKYLKEQRL PPMTFIPLQS VRVKQVFERL RNLGGTAKLV
601 FDVIQFDPEL EKAVLYAVGN TLVCDELEEA KVLSWSGERF KVVTVDGILL TKAGTMTGGT
661 SGGMEAKSNK WDDKKIEGLK KNKEDFEQQL ENIGSIREMQ MKESEISGKI SGLEKKIQYA
721 EIEKKSIKDK LPQLEQEERN IIEEIDRIKP ELSKARTEVD KRKTEMNKLE KRMNEIVDRI
781 YKDFSQSVGV PNIRVYEETQ LKTAEKEAEE RLELSNQLAK LKYQLEYEQN RDVGSRIRKI
841 ESSISSLETD LEGIQKTMSE RKETAVKITN EINNWKKEME ECKQKSEEYE KEILDWKKQA
901 SQATTSITKL NRQIHSKETQ IEQLISQKQE ITEKCELEHI TLPVLSDAME EDDSDGPQFD
961 FSELGRAYLQ ERRPSAREKV EAEFRQKIES KTSEIERTAP NLRALDQYEA IQEKEKQVSQ
1021 EFEAARKEEK QVADAFNTVK QKRYELFMEA FNHIASNIDK IYKQLTKSNT HPLGGTAYLN
1081 LENEDDPFLH GIKYTTMPPT KRFRDMEQLS GGEKTVAALA LLFSIHSYRP SPFFILDEVD
1141 AALDNLNVAK VAKFIRSKSC QAARDNQDAE DGNGFQSIVI SLKDSFYDKA EALVGVYRDT
1201 ERSCSSTMSF DLRNYQES
//