LOCUS AEE79238.1 233 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA polymerase II fifth largest subunit,
E protein.
ACCESSION CP002686-7736
PROTEIN_ID AEE79238.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RPB5E"
/locus_tag="AT3G54490"
/gene_synonym="''RNA polymerase II fifth largest subunit"
/gene_synonym="E"
/gene_synonym="E''"
/gene_synonym="RNA polymerase II fifth largest subunit"
/inference="Similar to RNA sequence,
EST:INSD:ES007848.1,INSD:EL988304.1,INSD:BP613392.1,
INSD:AI994985.1,INSD:CF773085.1,INSD:AV519733.1,
INSD:AU229030.1,INSD:F14448.1,INSD:DR362280.1,
INSD:BP613397.1,INSD:EL998909.1,INSD:AA394578.1,
INSD:EG514772.1,INSD:AV440440.1,INSD:BP605624.1,
INSD:EL986907.1,INSD:EH959991.1,INSD:EG514773.1"
/inference="Similar to RNA sequence, mRNA:INSD:BX825151.1"
/note="''RNA polymerase II fifth largest subunit, E''
(RPB5E); FUNCTIONS IN: DNA-directed RNA polymerase
activity, DNA binding; INVOLVED IN: transcription; LOCATED
IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA polymerase,
Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase,
subunit H/Rpb5 C-terminal (InterPro:IPR000783),
DNA-directed RNA polymerase, RPB5 subunit
(InterPro:IPR014381); BEST Arabidopsis thaliana protein
match is: Eukaryotic rpb5 RNA polymerase subunit family
protein (TAIR:AT3G57080.1); Has 766 Blast hits to 766
proteins in 283 species: Archae - 110; Bacteria - 0;
Metazoa - 159; Fungi - 216; Plants - 119; Viruses - 0;
Other Eukaryotes - 162 (source: NCBI BLink)."
/db_xref="TAIR:AT3G54490"
/db_xref="Araport:AT3G54490"
intron_pos 96:0 (1/3)
intron_pos 155:0 (2/3)
intron_pos 193:0 (3/3)
BEGIN
1 MEETMAEEGC CENVESTFDD GTNCISKTED TGGIESKRFY LARTTAFEML RDRGYEVNEA
61 ELSLTLSEFR SVFGEKPELE RLRICVPLRS DPKKKILVVF MGTEPITVKS VRALHIQISN
121 NVGLHAMILV LQSKMNHFAQ KALTTFPFTV ETFPIEDLLV NITKHIQQPK IEILNKEEKE
181 QLLRKHALED KQLPYLQEKD SFVRYYGLKK KQVVKITYSK EPVGDFVTYR CII
//