LOCUS AEE79098.1 284 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain-
containing protein protein.
ACCESSION CP002686-7550
PROTEIN_ID AEE79098.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RS2Z32"
/locus_tag="AT3G53500"
/gene_synonym="arginine/serine-rich zinc
knuckle-containing protein 32"
/gene_synonym="At-RS2Z"
/gene_synonym="RSZ32"
/inference="Similar to RNA sequence,
EST:INSD:DR339223.1,INSD:ES158431.1,INSD:EH837160.1,
INSD:EH897507.1,INSD:EH823615.1,INSD:DR339233.1,
INSD:AV819026.1,INSD:DR339211.1,INSD:BP835760.1,
INSD:AV819317.1,INSD:BP653371.1,INSD:ES109336.1,
INSD:DR339231.1,INSD:DR339214.1,INSD:BP607488.1,
INSD:T22516.1,INSD:BP814555.1,INSD:DR339222.1,
INSD:Z35757.1,INSD:BP637902.1,INSD:BP575583.1,
INSD:AV549638.1,INSD:ES108943.1,INSD:EH947929.1,
INSD:BP659491.1,INSD:DR339217.1,INSD:EL195619.1,
INSD:DR339218.1,INSD:BP650027.1,INSD:AV784274.1,
INSD:BP640654.1,INSD:DR339219.1,INSD:BP819276.1,
INSD:DR376522.1,INSD:AV531420.1,INSD:DR339216.1,
INSD:DR339226.1,INSD:ES180918.1,INSD:BP653217.1,
INSD:BP637184.1,INSD:DR339232.1,INSD:DR339225.1,
INSD:EH846247.1,INSD:EG455415.1,INSD:BP602803.1,
INSD:ES139325.1,INSD:DR339220.1,INSD:AV820951.1,
INSD:BP560585.3,INSD:BP643451.1,INSD:DR339228.1,
INSD:BP590180.1,INSD:BP841065.1,INSD:EH863875.1,
INSD:DR339224.1,INSD:AV788462.1,INSD:BP650956.1,
INSD:BP603283.1,INSD:EL320392.1,INSD:BP830762.1,
INSD:BP662736.1,INSD:BP811151.1,INSD:BP652536.1,
INSD:AV538494.1,INSD:DR339221.1,INSD:DR375060.1,
INSD:BP817470.1,INSD:BP642791.1,INSD:ES079487.1,
INSD:EL980457.1,INSD:DR378038.1,INSD:DR339209.1,
INSD:BP594826.1,INSD:BX835655.1,INSD:AV788211.1,
INSD:BP790845.1,INSD:DR339227.1,INSD:BP840644.1,
INSD:BP617788.1,INSD:BP840121.1,INSD:BP648393.1,
INSD:EH948345.1,INSD:ES135181.1,INSD:CK119689.1,
INSD:EL982152.1,INSD:BP650866.1,INSD:AV550793.1,
INSD:ES200989.1,INSD:DR339212.1,INSD:ES122180.1,
INSD:BP649085.1,INSD:BP813046.1,INSD:DR339229.1,
INSD:AV781959.1,INSD:DR339215.1,INSD:AV532772.1,
INSD:BP652206.1,INSD:ES130162.1,INSD:BP823176.1,
INSD:AV819886.1,INSD:BP657087.1,INSD:Z35746.1,
INSD:BP657989.1,INSD:BP839635.1,INSD:AV806807.1,
INSD:AV820610.1,INSD:EL127992.1,INSD:DR339230.1,
INSD:AV538498.1,INSD:BP804778.2,INSD:AA585795.1,
INSD:BP856122.1,INSD:BP866305.1,INSD:DR339210.1,
INSD:EG496404.1,INSD:DR339234.1,INSD:AV530600.1,
INSD:DR339213.1,INSD:BP648098.1,INSD:BP668693.1,
INSD:BP588921.1,INSD:DR339468.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX823008.1,INSD:BT001034.1,INSD:BX823516.1"
/note="RSZ32; FUNCTIONS IN: zinc ion binding, nucleotide
binding, nucleic acid binding; INVOLVED IN: nuclear mRNA
splicing, via spliceosome, RNA splicing; LOCATED IN:
mitochondrion; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677), Zinc finger, CCHC-type
(InterPro:IPR001878); BEST Arabidopsis thaliana protein
match is: arginine/serine-rich zinc knuckle-containing
protein 33 (TAIR:AT2G37340.1); Has 30335 Blast hits to
26620 proteins in 660 species: Archae - 6; Bacteria - 352;
Metazoa - 8518; Fungi - 1445; Plants - 2334; Viruses -
16371; Other Eukaryotes - 1309 (source: NCBI BLink)."
/db_xref="TAIR:AT3G53500"
/db_xref="Araport:AT3G53500"
intron_pos 36:2 (1/5)
intron_pos 50:0 (2/5)
intron_pos 82:0 (3/5)
intron_pos 146:2 (4/5)
intron_pos 180:2 (5/5)
BEGIN
1 MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FSDPRDADDA
61 RYYLDGRDFD GSRITVEASR GAPRGSRDNG SRGPPPGSGR CFNCGVDGHW ARDCTAGDWK
121 NKCYRCGERG HIERNCKNSP SPKKARQGGS YSRSPVKSRS PRRRRSPSRS RSYSRGRSYS
181 RSRSPVRREK SVEDRSRSPK AMERSVSPKG RDQSLSPDRK VIDASPKRGS DYDGSPKENG
241 NGRNSASPIV GGGESPVGLN GQDRSPIDDE AELSRPSPKG SESP
//