LOCUS AEE79046.1 483 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002686-7480
PROTEIN_ID AEE79046.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G53190"
/inference="Similar to RNA sequence,
EST:INSD:DR350837.1,INSD:EL009770.1,INSD:DR284907.1,
INSD:ES059612.1,INSD:ES117401.1,INSD:DR284910.1,
INSD:BP782459.1,INSD:ES124915.1,INSD:DR284925.1,
INSD:DR284924.1,INSD:ES205303.1,INSD:ES028412.1,
INSD:EL079462.1,INSD:DR284922.1,INSD:EL192492.1,
INSD:EH969918.1,INSD:DR284926.1,INSD:ES038051.1,
INSD:EL033295.1,INSD:CA781912.1,INSD:DR284914.1,
INSD:EG471536.1,INSD:BG459307.1,INSD:DR284917.1,
INSD:DR284920.1,INSD:AV534277.1,INSD:EL999995.1,
INSD:EL165509.1,INSD:DR284919.1,INSD:EH919087.1,
INSD:DR380120.1,INSD:AV544645.1,INSD:EL067177.1,
INSD:ES132499.1,INSD:AV557628.1,INSD:DR284911.1,
INSD:EH938674.1,INSD:EL235811.1,INSD:DR284912.1,
INSD:DR284927.1,INSD:DR284915.1,INSD:EL240391.1,
INSD:DR284916.1,INSD:DR284923.1,INSD:EL190225.1,
INSD:DR284918.1,INSD:EH820505.1,INSD:ES152571.1,
INSD:EH804939.1,INSD:EH857842.1,INSD:EL013232.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK221575.1,INSD:AY084835.1,INSD:BX824317.1"
/note="Pectin lyase-like superfamily protein; CONTAINS
InterPro DOMAIN/s: Pectin lyase fold/virulence factor
(InterPro:IPR011050), AmbAllergen (InterPro:IPR018082),
Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin
lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana
protein match is: Pectin lyase-like superfamily protein
(TAIR:AT5G04310.1); Has 1735 Blast hits to 1728 proteins
in 275 species: Archae - 0; Bacteria - 778; Metazoa - 0;
Fungi - 236; Plants - 699; Viruses - 0; Other Eukaryotes -
22 (source: NCBI BLink)."
/db_xref="TAIR:AT3G53190"
/db_xref="Araport:AT3G53190"
intron_pos 47:2 (1/6)
intron_pos 132:2 (2/6)
intron_pos 202:1 (3/6)
intron_pos 286:0 (4/6)
intron_pos 350:0 (5/6)
intron_pos 419:2 (6/6)
BEGIN
1 MMLQRSCIVL FFSLFLLVPQ MVFSMLNRTL LLIPHPDPEL VAYQVQWKVN ASITRRQALD
61 TTDQAGSTPC ITGNPIDDCW KCDPNWPNNR QGLADCGIGF GQYALGGKGG QFYFVTDSSD
121 DDAVNPKPGT LRYGVIQEEP LWIVFPSNMM IKLKQELIFN SYKTLDGRGA NVHIVGGGCI
181 TLQYVSNIII HNIHIHHCYQ SGNTNVRSSP THYGFRTKSD GDGISIFGSK DIWIDHCSLS
241 RCKDGLIDAV MGSTGITISN NFFSHHNEVM LLGHSDHYEP DSGMQVTIAF NHFGEKLIQR
301 MPRCRRGYIH VVNNDFTQWE MYAIGGSGNP TINSQGNRYT APTNPFAKEV TKRVETPDGD
361 WKGWNWRSEG DILVNGAFFV ASGEGAEMRY EKAYSVEPKS ASFITQITFH SGVLGVGGRN
421 NNLGMWTTTG SEGTSGLDSY NDYTDEMSGA GSTNRLSFSV LVFLLSSISY LVVFTSSTQM
481 FML
//