LOCUS AEE79038.1 496 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana P-loop containing nucleoside triphosphate
hydrolases superfamily protein protein.
ACCESSION CP002686-7469
PROTEIN_ID AEE79038.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="LOS4"
/locus_tag="AT3G53110"
/gene_synonym="LOW EXPRESSION OF OSMOTICALLY RESPONSIVE
GENES 4"
/inference="Similar to RNA sequence,
EST:INSD:EH880028.1,INSD:ES202952.1,INSD:BP607233.1,
INSD:EH846629.1,INSD:EG475837.1,INSD:EL010150.1,
INSD:ES013432.1,INSD:BP856139.1,INSD:DR224547.1,
INSD:DR322172.1,INSD:ES011273.1,INSD:BP839919.1,
INSD:EG460604.1,INSD:EG516757.1,INSD:BP639284.1,
INSD:ES071707.1,INSD:DR370117.1,INSD:EG516769.1,
INSD:AV831397.1,INSD:ES009082.1,INSD:DR186191.1,
INSD:AV806749.1,INSD:AV549634.1,INSD:BP644798.1,
INSD:BP818823.1,INSD:ES047765.1,INSD:EH893496.1,
INSD:EL245492.1,INSD:EH985031.1,INSD:ES029853.1,
INSD:BP661267.1,INSD:BP642175.1,INSD:AU227123.1,
INSD:EL044318.1,INSD:AI100350.1,INSD:AV815969.1,
INSD:AV797199.1,INSD:EG516758.1,INSD:ES047827.1,
INSD:BP818169.1,INSD:DR322174.1,INSD:EH937648.1,
INSD:BP657254.1,INSD:EH940151.1,INSD:EG503209.1,
INSD:EL240740.1,INSD:AV823718.1,INSD:EG474726.1,
INSD:ES097181.1,INSD:BP807420.1,INSD:BP829851.1,
INSD:ES196160.1,INSD:AV784747.1,INSD:BP637991.1,
INSD:BP616194.1,INSD:EH799800.1,INSD:EL980339.1,
INSD:EL172100.1,INSD:AV537645.1,INSD:EL237514.1,
INSD:DR322173.1,INSD:AV831810.1,INSD:BP636108.1,
INSD:ES125301.1,INSD:BP804330.1,INSD:ES161095.1,
INSD:DR322171.1,INSD:BP794049.1,INSD:EH959149.1,
INSD:EL285681.1,INSD:ES097521.1,INSD:ES004724.1,
INSD:ES087698.1,INSD:EL024550.1,INSD:DR322175.1,
INSD:ES153940.1,INSD:BP650272.1,INSD:EL176900.1,
INSD:AV829553.1,INSD:EL212255.1,INSD:AV817907.1,
INSD:EL011152.1,INSD:DR322176.1,INSD:EG516770.1,
INSD:ES178657.1,INSD:ES102867.1,INSD:EG475833.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX842141.1,INSD:BT008867.1,INSD:AY057548.1,
INSD:BT002444.1"
/note="LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4
(LOS4); FUNCTIONS IN: RNA helicase activity, RNA-dependent
ATPase activity, ATP-dependent helicase activity; INVOLVED
IN: poly(A)+ mRNA export from nucleus, response to cold,
response to heat, response to abscisic acid stimulus;
LOCATED IN: nuclear envelope, plasma membrane, cytoplasm;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase,
DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA
helicase, DEAD/DEAH box type, N-terminal
(InterPro:IPR011545), DEAD-like helicase, N-terminal
(InterPro:IPR014001), DNA/RNA helicase, C-terminal
(InterPro:IPR001650), Helicase, superfamily 1/2,
ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis
thaliana protein match is: eukaryotic initiation factor
4A-III (TAIR:AT3G19760.1); Has 40925 Blast hits to 40635
proteins in 3033 species: Archae - 702; Bacteria - 21081;
Metazoa - 5720; Fungi - 4311; Plants - 2419; Viruses - 28;
Other Eukaryotes - 6664 (source: NCBI BLink)."
/db_xref="TAIR:AT3G53110"
/db_xref="Araport:AT3G53110"
intron_pos 80:0 (1/7)
intron_pos 178:0 (2/7)
intron_pos 254:0 (3/7)
intron_pos 276:0 (4/7)
intron_pos 409:0 (5/7)
intron_pos 445:1 (6/7)
intron_pos 475:0 (7/7)
BEGIN
1 MADTVEKVPT VVESSSSSTV EASNSAEKTE PTTEKKKWGD VEDDDDEEEA VSELNSLSIK
61 EEEKPDSILE EPEDSNIKAV TSGDTPYTSA SRFEDLNLSP ELMKGLYVEM KFEKPSKIQA
121 ISLPMIMTPP HKHLIAQAHN GSGKTTCFVL GMLSRVDPTL REPQALCICP TRELANQNME
181 VLQKMGKFTG ITAELAVPDS TRGAPAATRG APVSAHVVIG TPGTLKKWMA FKRLGLNHLK
241 ILVFDEADHM LATDGFRDDS LKIMKDIGRV NPNFQVLLFS ATFNETVKDF VARTVKDPNQ
301 LFVKREDLAL DSVKQYKVVC PKEQNKIEVI KDQIMELGDI GQTIIFVKTK ASAQKVHKAL
361 AEMGYDVTSV HGNLTESDRD KIVKEFKECL TQVLIATDVI ARGFDQQRVN LVVNYNLPTK
421 YETGEPDYEV YLHRVGRAGR FGRKGAVFNL LLDDGWDKEV MEKIEKYFEA NVKEIKSWNS
481 EEEYKSALKE AGLLDE
//