LOCUS AEE78904.1 253 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-7303
PROTEIN_ID AEE78904.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PSRP2"
/locus_tag="AT3G52150"
/gene_synonym="plastid-specific ribosomal protein 2"
/inference="Similar to RNA sequence,
EST:INSD:EL126377.1,INSD:DR257351.1,INSD:EL303187.1,
INSD:DR360758.1,INSD:DR360747.1,INSD:EL005200.1,
INSD:EL001725.1,INSD:EL130833.1,INSD:CF774009.1,
INSD:EH914586.1,INSD:DR257363.1,INSD:EH865381.1,
INSD:EL330223.1,INSD:EL126970.1,INSD:DR359020.1,
INSD:EL231326.1,INSD:EL325349.1,INSD:DR360751.1,
INSD:EH947474.1,INSD:DR360757.1,INSD:EL121287.1,
INSD:EH906598.1,INSD:EL219873.1,INSD:DR257352.1,
INSD:ES091693.1,INSD:DR257357.1,INSD:EH883494.1,
INSD:DR257360.1,INSD:DR257355.1,INSD:DR257361.1,
INSD:DR360745.1,INSD:EH895506.1,INSD:DR360749.1,
INSD:AV831557.1,INSD:EL085650.1,INSD:EL119332.1,
INSD:EL248379.1,INSD:ES159295.1,INSD:BP865126.1,
INSD:EL183711.1,INSD:EH923843.1,INSD:EH957408.1,
INSD:BP832666.1,INSD:DR257358.1,INSD:EL144199.1,
INSD:R30427.1,INSD:EL167532.1,INSD:DR360756.1,
INSD:EL134126.1,INSD:ES075777.1,INSD:EL340115.1,
INSD:EL172411.1,INSD:DR359021.1,INSD:ES172762.1,
INSD:DR257356.1,INSD:ES028498.1,INSD:DR360754.1,
INSD:DR360755.1,INSD:BU636329.1,INSD:EH822158.1,
INSD:EL303693.1,INSD:EL326335.1,INSD:EL191697.1,
INSD:DR360746.1,INSD:EL278031.1,INSD:EL200172.1,
INSD:EL050881.1,INSD:EL215054.1,INSD:EL335856.1,
INSD:BP658111.1,INSD:EH989441.1,INSD:DR257354.1,
INSD:EH906665.1,INSD:DR257359.1,INSD:DR257364.1,
INSD:EH847320.1,INSD:EL076498.1,INSD:DR360750.1,
INSD:EL082843.1,INSD:EH818827.1,INSD:EH976150.1,
INSD:CK118356.1,INSD:BP841216.1,INSD:DR257350.1,
INSD:DR257365.1,INSD:DR360759.1,INSD:EL029529.1,
INSD:EL994086.1,INSD:ES139146.1,INSD:EL007749.1,
INSD:EL331978.1,INSD:ES038111.1,INSD:EH884374.1,
INSD:DR257353.1,INSD:EL046860.1,INSD:DR360748.1,
INSD:DR360744.1,INSD:ES183719.1,INSD:EL227404.1,
INSD:AV829059.1,INSD:EL053974.1,INSD:EL163012.1,
INSD:EL310142.1,INSD:BP868777.1,INSD:EH857626.1,
INSD:EL268382.1,INSD:ES021236.1,INSD:EL983787.1,
INSD:DR257362.1,INSD:EH934559.1,INSD:EL286132.1,
INSD:EH867178.1,INSD:EL228440.1,INSD:EH847475.1,
INSD:ES187246.1,INSD:ES006331.1,INSD:EL322509.1,
INSD:EL000413.1,INSD:EH971581.1,INSD:EL292355.1,
INSD:DR360753.1,INSD:EH952935.1,INSD:ES165374.1,
INSD:EL018078.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY133746.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; LOCATED IN: thylakoid, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis
thaliana protein match is: chloroplast RNA-binding protein
33 (TAIR:AT3G52380.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="TAIR:AT3G52150"
/db_xref="Araport:AT3G52150"
intron_pos 107:0 (1/3)
intron_pos 141:0 (2/3)
intron_pos 242:0 (3/3)
BEGIN
1 MATFLTNVVS IKPTIFSFQS ESFTPLHTRV NVFSSKPFPS LAGTFSRSSR TRFIPYAVTE
61 TEEKPAALDP SSEAARRVYI GNIPRTVTNE QLTKLVEEHG AVEKVQVMYD KYSGRSRRFG
121 FATMKSVEDA NAVVEKLNGN TVEGREIKVN ITEKPIASSP DLSVLQSEDS AFVDSPYKVY
181 VGNLAKTVTK EMLENLFSEK GKVVSAKVSR VPGTSKSTGF GFVTFSSEED VEAAIVALNN
241 SLLEGQKIRV NKA
//