LOCUS AEE78882.1 413 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana 5'-3' exonuclease family protein protein.
ACCESSION CP002686-7272
PROTEIN_ID AEE78882.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G52050"
/inference="Similar to RNA sequence,
EST:INSD:EL034090.1,INSD:ES015801.1,INSD:EL990763.1,
INSD:ES192659.1,INSD:EL282109.1,INSD:BX838252.1,
INSD:BX835217.1,INSD:BP780923.1,INSD:ES033330.1,
INSD:ES145847.1,INSD:EL146421.1,INSD:BX834657.1,
INSD:EL262147.1,INSD:ES080496.1,INSD:EL971067.1,
INSD:AV566245.1"
/note="5'-3' exonuclease family protein; FUNCTIONS IN:
5'-3' exonuclease activity, DNA binding, catalytic
activity; LOCATED IN: mitochondrion; CONTAINS InterPro
DOMAIN/s: 5'-3' exonuclease, SAM-fold domain
(InterPro:IPR020047), 5'-3' exonuclease, N-terminal
(InterPro:IPR002421), 5'-3' exonuclease, C-terminal
subdomain (InterPro:IPR020045), 5'-3' exonuclease,
N-terminal resolvase-like domain (InterPro:IPR020046),
Helix-hairpin-helix motif, class 2 (InterPro:IPR008918);
BEST Arabidopsis thaliana protein match is: 5'-3'
exonuclease family protein (TAIR:AT1G34380.2); Has 9856
Blast hits to 9849 proteins in 2572 species: Archae - 3;
Bacteria - 6248; Metazoa - 6; Fungi - 2; Plants - 105;
Viruses - 31; Other Eukaryotes - 3461 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G52050"
/db_xref="Araport:AT3G52050"
intron_pos 43:0 (1/14)
intron_pos 114:1 (2/14)
intron_pos 141:0 (3/14)
intron_pos 154:0 (4/14)
intron_pos 160:1 (5/14)
intron_pos 166:1 (6/14)
intron_pos 209:0 (7/14)
intron_pos 232:0 (8/14)
intron_pos 260:2 (9/14)
intron_pos 297:1 (10/14)
intron_pos 314:1 (11/14)
intron_pos 334:0 (12/14)
intron_pos 349:0 (13/14)
intron_pos 374:0 (14/14)
BEGIN
1 MTLHLYHHSR FLWRNLCFPR SVGNLCNRNC SLISPSLARS AKYYCSSVAV SEFSNEAASG
61 STLTSISEDV TPQSIKYPFK SEERVASTAA SSNGRVMLID GTSIIYRAYY KLLARLNHGH
121 LAHADGNADW VLTIFSSLSL LIDVLKFLPS HVAVVFDHDG YRSAKGMNFR HTLYPAYKSN
181 RPPTPDTIVQ GLQYLKASIK AMSIKVIEVP GVEADDVIGT LAMRSISAGF KVRVVSPDKD
241 FFQILSPSLR LLRLTPRGSE MASFGMEDFA KKFGNLEPAQ FVDIIALAGD KSDNIPGVDG
301 IGNVHAVELI SRFGTLENLL QSVDEIKEGK IKESLIASAD QAILSKKLAL LRSDLPDYIV
361 PFDTKDLTFK KPEDNGEKLS SLLIAIADYA EGFSADPVIR RAFRLWEKLE AVP
//