LOCUS AEE78867.1 540 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein protein.
ACCESSION CP002686-7254
PROTEIN_ID AEE78867.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G51950"
/inference="Similar to RNA sequence,
EST:INSD:EL989083.1,INSD:ES095363.1,INSD:AV524595.1,
INSD:EL327023.1,INSD:DR292205.1,INSD:EH946737.1,
INSD:EL241472.1,INSD:DR286370.1,INSD:ES054872.1,
INSD:Z30850.1,INSD:ES064652.1,INSD:ES171297.1,
INSD:ES096852.1,INSD:EL224526.1,INSD:ES063501.1,
INSD:T76910.1,INSD:AV538165.1,INSD:ES045738.1,
INSD:BP846861.1,INSD:EH816229.1,INSD:ES002248.1,
INSD:ES112560.1,INSD:ES024843.1,INSD:DR292204.1,
INSD:EH938000.1,INSD:ES196751.1,INSD:ES005411.1,
INSD:EH897324.1,INSD:BP851603.1,INSD:ES134681.1,
INSD:EL040793.1,INSD:ES044780.1,INSD:EH948734.1,
INSD:EL103010.1,INSD:EL164174.1,INSD:DR292207.1,
INSD:ES204574.1,INSD:EL300678.1,INSD:EL213808.1,
INSD:EL982879.1,INSD:EG491204.1,INSD:EL984168.1,
INSD:BP780545.1,INSD:EH983078.1,INSD:EL186352.1,
INSD:EL237120.1,INSD:EL220464.1,INSD:EH924413.1,
INSD:AV523604.1,INSD:EL122078.1,INSD:ES027071.1,
INSD:EL312551.1,INSD:EL184633.1,INSD:ES035530.1,
INSD:BP857435.1,INSD:ES129974.1,INSD:EH989035.1,
INSD:BP858449.1,INSD:ES195544.1,INSD:EL988558.1,
INSD:EL086092.1,INSD:EL128150.1,INSD:ES119070.1,
INSD:EL975717.1,INSD:EH875917.1,INSD:EL032124.1,
INSD:EH925842.1,INSD:ES134518.1,INSD:ES205092.1,
INSD:EL025143.1,INSD:EL239109.1,INSD:EL985468.1,
INSD:DR292206.1,INSD:ES045607.1,INSD:DR292202.1,
INSD:DR286373.1,INSD:BP798714.1,INSD:ES131461.1,
INSD:ES140382.1,INSD:DR286378.1,INSD:EH860267.1,
INSD:EL282644.1,INSD:EL333041.1,INSD:EL104962.1,
INSD:EL157604.1,INSD:EH981847.1,INSD:AV825539.1,
INSD:EL267331.1,INSD:ES110648.1,INSD:EL070410.1,
INSD:BP850785.1,INSD:DR286372.1,INSD:ES010554.1,
INSD:BP576262.1,INSD:BP803437.1,INSD:EL231434.1,
INSD:EL027550.1,INSD:BP800567.1,INSD:DR292203.1,
INSD:ES123547.1,INSD:EH918605.1,INSD:EH863677.1,
INSD:ES043618.1,INSD:EG437536.1,INSD:ES067802.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY150500.1"
/note="Zinc finger (CCCH-type) family protein / RNA
recognition motif (RRM)-containing protein; FUNCTIONS IN:
RNA binding, nucleotide binding, zinc ion binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type
(InterPro:IPR000571), RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT3G63450.3); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="TAIR:AT3G51950"
/db_xref="Araport:AT3G51950"
intron_pos 225:2 (1/6)
intron_pos 280:2 (2/6)
intron_pos 342:2 (3/6)
intron_pos 365:1 (4/6)
intron_pos 461:2 (5/6)
intron_pos 521:2 (6/6)
BEGIN
1 MDGYEATRIV LSRIQSLDPE NASKIMGLLL LQDHGEKEMI RLAFGPETLV HSVIVKAKKE
61 LGLMNCSRSP WSHQDELISP KNNRGSSLNP ASLPFYANGG RSSRDLTNDF ELMDDMNSRS
121 TDFLGSVHAR SGSCVLDGLG YGGDSDLGFG GVPCSYFARG FCKNGASCRF VHSDGGADLV
181 GSPSRIELLR SNSVPPRLAH HFMTRSSLPS FSTKGVNLQQ NDVQRAAAAL MIGDELQKLG
241 RWRPERIDLS AMACPASRQI YLTFPADSRF REEDVSNYFS TFGPVQDVRI PYQQKRMFGF
301 VTFVYPETVK SILAKGNPHF VCDSRVLVKP YKEKGKVPDK YRTNQTTERE LSPTGLDSSP
361 RDVLGGRGFY NNTQDVLWRS KFEEEILELQ SRRLMNLQLL DVKKHFQLNS PTNIHSPNPF
421 SQSLISPRPL SVIKREYDGG EKGKGSSKEG SDDDTMNLPE RLEDSLPDSP FASPAHHLLL
481 FADSADNNGS DLWSPSSDND DNSTPSTLSD SFNSFNYQMP RLPAIGMLPG RGGPTCRVGI
//