LOCUS AEE78665.1 794 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pentatricopeptide repeat (PPR) superfamily
protein protein.
ACCESSION CP002686-6995
PROTEIN_ID AEE78665.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G50420"
/inference="Similar to RNA sequence,
EST:INSD:DR374078.1,INSD:EH920688.1,INSD:EH902721.1"
/note="Pentatricopeptide repeat (PPR) superfamily protein;
FUNCTIONS IN: binding; INVOLVED IN: biological_process
unknown; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 7 plant structures; EXPRESSED DURING: petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; CONTAINS InterPro DOMAIN/s:
Pentatricopeptide repeat (InterPro:IPR002885),
Tetratricopeptide-like helical (InterPro:IPR011990); BEST
Arabidopsis thaliana protein match is: Pentatricopeptide
repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has
48124 Blast hits to 13590 proteins in 226 species: Archae
- 0; Bacteria - 6; Metazoa - 116; Fungi - 107; Plants -
47293; Viruses - 0; Other Eukaryotes - 602 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G50420"
/db_xref="Araport:AT3G50420"
intron_pos 16:1 (1/3)
intron_pos 59:0 (2/3)
intron_pos 85:2 (3/3)
BEGIN
1 MTRGSMKRSV LFVETDAAAE YPYANNNLIS MYVRCSSLEQ ARKVFDKMPQ RNIVTLFGLS
61 AVFEYVSMGS SLHSQIIKLG SFQMIFFMPL NEIASSVVEL TRKCVSITVL KRARQIHALV
121 LTAGAGAATE SPYANNNLIS MYVRCGSLEQ ARKVFDKMPH RNVVSYNALY SAYSRNPDFA
181 SYAFPLTTHM AFEYVKPNSS TFTSLVQVCA VLEDVLMGSS LNSQIIKLGY SDNVVVQTSV
241 LGMYSSCGDL ESARRIFDCV NNRDAVAWNT MIVGSLKNDK IEDGLMFFRN MLMSGVDPTQ
301 FTYSIVLNGC SKLGSYSLGK LIHARIIVSD SLADLPLDNA LLDMYCSCGD MREAFYVFGR
361 IHNPNLVSWN SIISGCSENG FGEQAMLMYR RLLRMSTPRP DEYTFSAAIS ATAEPERFVH
421 GKLLHGQVTK LGYERSVFVG TTLLSMYFKN REAESAQKVF DVMKERDVVL WTEMIVGHSR
481 LGNSELAVQF FIEMYREKNR SDGFSLSSVI GACSDMAMLR QGEVFHCLAI RTGFDCVMSV
541 CGALVDMYGK NGKYETAETI FSLASNPDLK CWNSMLGAYS QHGMVEKALS FFEQILENGF
601 MPDAVTYLSL LAACSHRGST LQGKFLWNQM KEQGIKAGFK HYSCMVNLVS KAGLVDEALE
661 LIEQSPPGNN QAELWRTLLS ACVNTRNLQI GLYAAEQILK LDPEDTATHI LLSNLYAVNG
721 RWEDVAEMRR KIRGLASSKD PGLSWIEVNN NNTQVFSSGD QSNPEVVSQA QDELNRLKRN
781 MLCKSSFNKL VCSN
//